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用于2型糖尿病治疗的植物化学物质分子对接:一种网络药理学方法。

Molecular Docking of Phytochemicals for Type 2 Diabetes Mellitus Therapy: A Network Pharmacology Approach.

作者信息

Sri Prakash Sooriyakala Rani, Kamalnath Sree Meenakshi, Antonisamy Arul Jayanthi, Marimuthu Sivasankari, Malayandi Sankar

机构信息

Department of Biotechnology, Mepco Schlenk Engineering College (Autonomous), Sivakasi, Tamil Nadu, India.

出版信息

Int J Mol Cell Med. 2023;12(4):372-387. doi: 10.22088/IJMCM.BUMS.12.4.372.

Abstract

Identification of potential lead molecules in herbal medicines is crucial not only for validation but also for drug discovery. This study was focused on identifying the therapeutic mechanisms of 10 common herbs used to treat type 2 diabetes mellitus (T2DM) using network pharmacology and docking studies. Details pertaining to medicinal plants and their phytoconstituents were obtained from Indian Medicinal Plants, Phytochemistry, and Therapeutics and Dr. Duke's database, respectively. MolSoft was used to assess their drug likeness. Prediction of protein targets for the screened phytochemicals and the list of target genes involved in T2DM were obtained using Swiss TargetPrediction and GeneCards respectively. STRING; Cytoscape; Database for Annotation, Visualization, and Integrated Discovery; and PyRx were used for network construction, network analysis, gene ontology analysis, and molecular docking, respectively. The protein targets MAPK1, AKT1, PI3K, and EGFR were identified to play a crucial role in the progression of T2DM. Furthermore, molecular docking indicated that nimbaflavone exhibited high binding affinities for MAPK1 (-8.7 kcal/mole) and PI3K (-9.6 kcal/mole), whereas rutin and 10-hydroxyaloin-B showed high binding affinities for AKT1 (-7.4 kcal/mole) and EGFR (-8.1 kcal/mole), respectively. The findings from this study suggest that flavonoids are the major phytoconstituents that display antidiabetic activity by interacting with key protein molecules related to the MAPK and PI3K-AKT signaling pathways, thereby aiding in the treatment of T2DM. The activation of these pathways alters Ras-GTPase activity and enhances the expression of GLUT4, a glucose transporter, resulting in the uptake of glucose from the bloodstream.

摘要

确定草药中的潜在先导分子不仅对验证至关重要,而且对药物发现也至关重要。本研究聚焦于利用网络药理学和对接研究来确定用于治疗2型糖尿病(T2DM)的10种常见草药的治疗机制。分别从《印度药用植物、植物化学与治疗学》和杜克博士数据库中获取了有关药用植物及其植物成分的详细信息。使用MolSoft评估它们的类药性。分别使用瑞士靶点预测和基因卡片获得筛选出的植物化学物质的蛋白质靶点预测以及T2DM中涉及的靶基因列表。STRING、Cytoscape、注释、可视化和综合发现数据库以及PyRx分别用于网络构建、网络分析、基因本体分析和分子对接。已确定蛋白靶点MAPK1、AKT1、PI3K和EGFR在T2DM的进展中起关键作用。此外,分子对接表明,尼姆黄酮对MAPK1(-8.7千卡/摩尔)和PI3K(-9.6千卡/摩尔)表现出高结合亲和力,而芦丁和10-羟基芦荟素-B分别对AKT1(-7.4千卡/摩尔)和EGFR(-8.1千卡/摩尔)表现出高结合亲和力。本研究的结果表明,黄酮类化合物是主要的植物成分,它们通过与MAPK和PI3K-AKT信号通路相关的关键蛋白分子相互作用来发挥抗糖尿病活性,从而有助于T2DM的治疗。这些信号通路的激活会改变Ras-GTP酶的活性,并增强葡萄糖转运蛋白GLUT4的表达,从而导致从血液中摄取葡萄糖。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/402d/11240057/209c78531a38/ijmcm-12-372-g001.jpg

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