Gao Xinqiang, Ma Qiang, Zhang Xiaomeng, Wang Xingyun, Wang Nuohan, Cui Yupeng, Li Shuyan, Ma Shengming, Wang Hong, Zhang Kunpeng
College of Biology and Food Engineering, Anyang Institute of Technology, Anyang, China.
Henan Artemisia Argyi Medical Research Center, Anyang, China.
Front Plant Sci. 2024 Jun 28;15:1406592. doi: 10.3389/fpls.2024.1406592. eCollection 2024.
, a perennial herb of the genus in the family Asteraceae, holds significant importance in Chinese traditional medicine, referred to as "Aicao". Here, we report a high-quality reference genome of L. cv. beiai, with a genome size up to 4.15 Gb and a contig N50 of 508.96 Kb, produced with third-generation Nanopore sequencing technology. We predicted 147,248 protein-coding genes, with approximately 68.86% of the assembled sequences comprising repetitive elements, primarily long terminal repeat retrotransposons(LTRs). Comparative genomics analysis shows that has the highest number of specific gene families with 5121, and much more families with four or more members than the other 6 plant species, which is consistent with its more expanded gene families and fewer contracted gene families. Furthermore, through transcriptome sequencing of in response to exogenous MeJA treatment, we have elucidated acquired regulatory insights into MeJA's impact on the phenylpropanoid, flavonoid, and terpenoid biosynthesis pathways of . The whole-genome information obtained in this study serves as a valuable resource for delving deeper into the cultivation and molecular breeding of . Moreover, it holds promise for enhancing genome assemblies across other members of the Asteraceae family. The identification of key genes establishes a solid groundwork for developing new varieties of with elevated concentrations of active compounds.
[植物名称],菊科[属名]的一种多年生草本植物,在中国传统医学中具有重要意义,被称为“艾草”。在此,我们报道了[植物名称]栽培品种“北艾”的高质量参考基因组,该基因组大小达4.15 Gb,使用第三代纳米孔测序技术产生的重叠群N50为508.96 Kb。我们预测了147,248个蛋白质编码基因,组装序列中约68.86%由重复元件组成,主要是长末端重复逆转座子(LTRs)。比较基因组学分析表明,[植物名称]拥有最多的特定基因家族,数量为5121个,且拥有四个或更多成员的家族比其他6种植物多得多,这与其基因家族扩张较多且收缩较少的情况一致。此外,通过对[植物名称]响应外源茉莉酸甲酯(MeJA)处理的转录组测序,我们阐明了MeJA对[植物名称]苯丙烷类、黄酮类和萜类生物合成途径影响的获得性调控见解。本研究获得的全基因组信息是深入研究[植物名称]栽培和分子育种的宝贵资源。此外,它有望改进菊科其他成员的基因组组装。关键基因的鉴定为培育活性化合物浓度升高的[植物名称]新品种奠定了坚实基础。