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单细胞和批量RNA测序的综合分析基于药物反应基因鉴定出一种特征,以预测卵巢癌的预后和治疗反应。

Integrated analysis of single-cell and bulk RNA-sequencing identifies a signature based on drug response genes to predict prognosis and therapeutic response in ovarian cancer.

作者信息

Zhang ZhenWei, Chen MianMian, Peng XiaoLian

机构信息

Jinjiang Municipal Hospital(Shanghai Sixth People's Hospital Fujian Campus), No. 16, Luoshan Section, Jinguang Road, Luoshan Street, Jinjiang City, Quanzhou, Fujian, China.

出版信息

Heliyon. 2024 Jun 20;10(13):e33367. doi: 10.1016/j.heliyon.2024.e33367. eCollection 2024 Jul 15.

DOI:10.1016/j.heliyon.2024.e33367
PMID:39040239
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11260940/
Abstract

Ovarian cancer represents a severe gynecological malignancy with a dire prognosis, underscoring the imperative need for dependable biomarkers that can accurately predict drug response and guide therapeutic choices. In this study, we harnessed online single-cell RNA sequencing (scRNAseq) and bulk RNA sequencing (RNAseq) datasets, applying the Scissor algorithm to identify cells responsive to paclitaxel. From these cells, we derived a gene signature, subsequently used to construct a prognostic model that demonstrated high sensitivity and specificity in predicting patient outcomes. Moreover, we conducted pathway and functional enrichment analyses to uncover potential molecular mechanisms driving the prognostic gene signature. This study illustrates the critical role of scRNAseq and bulk RNAseq in developing precise prognostic models for ovarian cancer, potentially transforming clinical decision-making.

摘要

卵巢癌是一种严重的妇科恶性肿瘤,预后极差,这凸显了对可靠生物标志物的迫切需求,这些生物标志物能够准确预测药物反应并指导治疗选择。在本研究中,我们利用在线单细胞RNA测序(scRNAseq)和批量RNA测序(RNAseq)数据集,应用Scissor算法来识别对紫杉醇有反应的细胞。从这些细胞中,我们得出了一个基因特征,随后用于构建一个预后模型,该模型在预测患者预后方面表现出高敏感性和特异性。此外,我们进行了通路和功能富集分析,以揭示驱动预后基因特征的潜在分子机制。本研究说明了scRNAseq和批量RNAseq在开发卵巢癌精确预后模型中的关键作用,可能会改变临床决策。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f134/11260940/ce4c7be1efd6/gr6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f134/11260940/425f105dd930/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f134/11260940/084a62de77aa/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f134/11260940/4c582236566e/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f134/11260940/d83974dbfbd3/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f134/11260940/1f311c3c99a6/gr5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f134/11260940/ce4c7be1efd6/gr6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f134/11260940/425f105dd930/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f134/11260940/084a62de77aa/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f134/11260940/4c582236566e/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f134/11260940/d83974dbfbd3/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f134/11260940/1f311c3c99a6/gr5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f134/11260940/ce4c7be1efd6/gr6.jpg

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本文引用的文献

1
Tumor microenvironment squeezes out the juice from T cells.肿瘤微环境从T细胞中榨取养分。
Cell Res. 2024 Oct;34(10):677-678. doi: 10.1038/s41422-024-00987-4.
2
Integrating bulk and single-cell sequencing data to construct a Scissor dendritic cells prognostic model for predicting prognosis and immune responses in ESCC.整合批量和单细胞测序数据以构建用于预测食管癌预后和免疫反应的Scissor树突状细胞预后模型。
Cancer Immunol Immunother. 2024 Apr 15;73(6):97. doi: 10.1007/s00262-024-03683-9.
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PARP Inhibitors in Newly Diagnosed and Recurrent Ovarian Cancer.
聚腺苷二磷酸核糖聚合酶抑制剂在新发和复发性卵巢癌中的应用。
Am J Clin Oncol. 2023 Sep 1;46(9):414-419. doi: 10.1097/COC.0000000000001024. Epub 2023 Jun 12.
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Development and internal-external validation of statistical and machine learning models for breast cancer prognostication: cohort study.统计和机器学习模型在乳腺癌预后预测中的开发和内外验证:队列研究。
BMJ. 2023 May 10;381:e073800. doi: 10.1136/bmj-2022-073800.
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Integrative single-cell sequencing analysis distinguishes survival-associated cells from the breast cancer microenvironment.整合单细胞测序分析将乳腺癌微环境中的生存相关细胞区分开来。
Cancer Med. 2023 Jun;12(11):12896-12911. doi: 10.1002/cam4.5892. Epub 2023 Apr 6.
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RNA-Seq Analysis of Clinical Samples from TCGA Reveal Molecular Signatures for Ovarian Cancer.来自癌症基因组图谱(TCGA)临床样本的RNA测序分析揭示了卵巢癌的分子特征。
Cancer Invest. 2023 Apr;41(4):394-404. doi: 10.1080/07357907.2023.2182123. Epub 2023 Feb 27.
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A biomarker-driven therapy for ovarian cancer.一种基于生物标志物的卵巢癌治疗方法。
Nat Med. 2023 Feb 16. doi: 10.1038/d41591-023-00018-6.
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Targeting ovarian cancer stem cells: a new way out.靶向卵巢癌干细胞:新出路。
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Small-Molecule-Mediated Stabilization of PP2A Modulates the Homologous Recombination Pathway and Potentiates DNA Damage-Induced Cell Death.小分子介导的 PP2A 稳定调控同源重组途径并增强 DNA 损伤诱导的细胞死亡。
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Ovarian, Uterine, and Vulvovaginal Cancers: Screening, Treatment Overview, and Prognosis.卵巢癌、子宫癌和阴道癌:筛查、治疗概述和预后。
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