Department of Molecular Biosciences, Center for Systems and Synthetic Biology, The University of Texas at Austin, Austin, TX, USA.
The Freshman Research Initiative, College of Natural Sciences, The University of Texas at Austin, Austin, TX, USA.
Nat Commun. 2024 Jul 24;15(1):6242. doi: 10.1038/s41467-024-50639-9.
Engineered DNA will slow the growth of a host cell if it redirects limiting resources or otherwise interferes with homeostasis. Escape mutants that alleviate this burden can rapidly evolve and take over cell populations, making genetic engineering less reliable and predictable. Synthetic biologists often use genetic parts encoded on plasmids, but their burden is rarely characterized. We measured how 301 BioBrick plasmids affected Escherichia coli growth and found that 59 (19.6%) were burdensome, primarily because they depleted the limited gene expression resources of host cells. Overall, no BioBricks reduced the growth rate of E. coli by >45%, which agreed with a population genetic model that predicts such plasmids should be unclonable. We made this model available online for education ( https://barricklab.org/burden-model ) and added our burden measurements to the iGEM Registry. Our results establish a fundamental limit on what DNA constructs and genetic modifications can be successfully engineered into cells.
如果工程化 DNA 重新分配限制资源或干扰内稳态,就会减缓宿主细胞的生长。能够减轻这种负担的逃逸突变体可以迅速进化并接管细胞群体,从而降低基因工程的可靠性和可预测性。合成生物学家通常使用编码在质粒上的遗传元件,但它们的负担很少被描述。我们测量了 301 个 BioBrick 质粒如何影响大肠杆菌的生长,发现有 59 个(19.6%)是负担沉重的,主要是因为它们耗尽了宿主细胞有限的基因表达资源。总体而言,没有任何 BioBricks 使大肠杆菌的生长速率降低超过 45%,这与一个种群遗传模型的预测一致,该模型预测这种质粒应该是不可克隆的。我们将这个模型在线上提供给教育使用(https://barricklab.org/burden-model),并将我们的负担测量结果添加到 iGEM 注册表中。我们的结果确定了可以成功工程化到细胞中的 DNA 构建体和遗传修饰的基本限制。