Institute of Bacterial Infections and Zoonoses, Friedrich-Loeffler-Institut, Federal Research Institute for Animal Health, Naumburger Straße 96a, 07743 Jena, Germany.
Present address: Landesuntersuchungsamt Rheinland-Pfalz, Koblenz, Germany.
Microb Genom. 2024 Jul;10(7). doi: 10.1099/mgen.0.001270.
has significant clinical importance as a leading cause of healthcare-associated infections, with symptoms ranging from mild diarrhoea to severe colitis, and possible life-threatening complications. ribotype (RT) 002, mainly associated with MLST sequence type (ST) 8, is one of the most common RTs found in humans. This study aimed at investigating the genetic characteristics of 537 genomes of ST8/RT002. To this end, we sequenced 298 . strains representing a new European genome collection, with strains from Germany, Denmark, France and Portugal. These sequences were analysed against a global dataset consisting of 1,437 ST8 genomes available through Enterobase. Our results showed close genetic relatedness among the studied ST8 genomes, a diverse array of antimicrobial resistance (AMR) genes and the presence of multiple mobile elements. Notably, the pangenome analysis revealed an open genomic structure. ST8 shows relatively low overall variation. Thus, clonal isolates were found across different One Health sectors (humans, animals, environment and food), time periods, and geographical locations, suggesting the lineage's stability and a universal environmental source. Importantly, this stability did not hinder the acquisition of AMR genes, emphasizing the adaptability of this bacterium to different selective pressures. Although only 2.4 % (41/1,735) of the studied genomes originated from non-human sources, such as animals, food, or the environment, we identified 9 cross-sectoral core genome multilocus sequence typing (cgMLST) clusters. Our study highlights the importance of ST8 as a prominent lineage of with critical implications in the context of One Health. In addition, these findings strongly support the need for continued surveillance and investigation of non-human samples to gain a more comprehensive understanding of the epidemiology of .
它作为导致医疗保健相关感染的主要原因之一,具有重要的临床意义,其症状从轻度腹泻到严重结肠炎不等,并且可能有危及生命的并发症。 型(RT)002 主要与 MLST 序列型(ST)8 相关,是人类中最常见的 RT 之一。本研究旨在调查 537 株 ST8/RT002 基因组的遗传特征。为此,我们对 298 株代表新的欧洲基因组集合的 菌株进行了测序,这些菌株来自德国、丹麦、法国和葡萄牙。这些序列与通过 Enterobase 提供的 1437 株 ST8 基因组的全球数据集进行了分析。我们的结果表明,所研究的 ST8 基因组之间具有密切的遗传相关性,存在多种抗生素耐药(AMR)基因和多种移动元件。值得注意的是,泛基因组分析显示出开放的基因组结构。ST8 显示出相对较低的总体变异。因此,在不同的“One Health”领域(人类、动物、环境和食品)、时间段和地理位置发现了克隆分离株,这表明该谱系的稳定性和普遍的环境来源。重要的是,这种稳定性并没有阻碍 AMR 基因的获得,强调了这种细菌对不同选择压力的适应性。虽然只有 2.4%(41/1735)的研究基因组来自非人类来源,如动物、食品或环境,但我们确定了 9 个跨部门核心基因组多位点序列分型(cgMLST)簇。我们的研究强调了 ST8 作为 的重要谱系的重要性,这对 One Health 具有重要意义。此外,这些发现强烈支持需要继续监测和调查非人类样本,以更全面地了解 的流行病学。