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非生物胁迫下大豆中mRNA m⁶A甲基转移酶的全基因组鉴定与功能分析

Genome-wide identification and functional analysis of mRNA mA writers in soybean under abiotic stress.

作者信息

Liu Peng, Liu Huijie, Zhao Jie, Yang Tengfeng, Guo Sichao, Chang Luo, Xiao Tianyun, Xu Anjie, Liu Xiaoye, Zhu Changhua, Gan Lijun, Chen Mingjia

机构信息

College of Life Sciences, Nanjing Agricultural University, Nanjing, China.

Department of Criminal Science and Technology, Nanjing Police University, Nanjing, China.

出版信息

Front Plant Sci. 2024 Jul 11;15:1446591. doi: 10.3389/fpls.2024.1446591. eCollection 2024.

Abstract

N-methyladenosine (mA), a well-characterized RNA modification, is involved in regulating multiple biological processes; however, genome-wide identification and functional characterization of the mA modification in legume plants, including soybean ( (L.) Merr.), remains lacking. In this study, we utilized bioinformatics tools to perform comprehensive analyses of molecular writer candidates associated with the RNA mA modification in soybean, characterizing their conserved domains, motifs, gene structures, promoters, and spatial expression patterns. Thirteen mA writer complex genes in soybean were identified, which were assigned to four families: MT-A70, WTAP, VIR, and HAKAI. It also can be identified that multiple cis elements in the promoters of these genes, which were classified into five distinct groups, including elements responsive to light, phytohormone regulation, environmental stress, development, and others, suggesting that these genes may modulate various cellular and physiological processes in plants. Importantly, the enzymatic activities of two identified mA writers, GmMTA1 and GmMTA2, were confirmed . Furthermore, we analyzed the expression patterns of the s and s under different abiotic stresses, revealing their potential involvement in stress tolerance, especially in the response to alkalinity or darkness. Overexpressing and in soybean altered the tolerance of the plants to alkalinity and long-term darkness, further confirming their effect on the stress response. Collectively, our findings identified the RNA mA writer candidates in leguminous plants and highlighted the potential roles of s and s in the response to abiotic stress in soybean.

摘要

N6-甲基腺苷(mA)是一种已被充分表征的RNA修饰,参与调控多种生物学过程;然而,包括大豆(Glycine max (L.) Merr.)在内的豆科植物中mA修饰的全基因组鉴定和功能表征仍然缺乏。在本研究中,我们利用生物信息学工具对大豆中与RNA mA修饰相关的分子写入器候选物进行了全面分析,表征了它们的保守结构域、基序、基因结构、启动子和空间表达模式。在大豆中鉴定出13个mA写入器复合基因,它们被分为四个家族:MT-A70、WTAP、VIR和HAKAI。还可以确定这些基因启动子中的多个顺式元件,这些元件被分为五个不同的组,包括对光、植物激素调节、环境胁迫、发育等有响应的元件,这表明这些基因可能调节植物中的各种细胞和生理过程。重要的是,证实了两个已鉴定的mA写入器GmMTA1和GmMTA2的酶活性。此外,我们分析了在不同非生物胁迫下s和s的表达模式,揭示了它们在胁迫耐受性中的潜在作用,特别是在对碱度或黑暗的响应中。在大豆中过表达和改变了植物对碱度和长期黑暗的耐受性,进一步证实了它们对胁迫响应的影响。总的来说,我们的研究结果鉴定了豆科植物中的RNA mA写入器候选物,并突出了s和s在大豆对非生物胁迫响应中的潜在作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0598/11269220/aa0a59abd25e/fpls-15-1446591-g001.jpg

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