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真核生物核糖体的喙:生命、工作和奇迹。

The Beak of Eukaryotic Ribosomes: Life, Work and Miracles.

机构信息

Instituto de Biomedicina de Sevilla, Hospital Universitario Virgen del Rocío/CSIC/Universidad de Sevilla, E-41013 Seville, Spain.

Departamento de Genética, Facultad de Biología, Universidad de Sevilla, E-41012 Seville, Spain.

出版信息

Biomolecules. 2024 Jul 22;14(7):882. doi: 10.3390/biom14070882.

DOI:10.3390/biom14070882
PMID:39062596
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11274626/
Abstract

Ribosomes are not totally globular machines. Instead, they comprise prominent structural protrusions and a myriad of tentacle-like projections, which are frequently made up of ribosomal RNA expansion segments and N- or C-terminal extensions of ribosomal proteins. This is more evident in higher eukaryotic ribosomes. One of the most characteristic protrusions, present in small ribosomal subunits in all three domains of life, is the so-called beak, which is relevant for the function and regulation of the ribosome's activities. During evolution, the beak has transitioned from an all ribosomal RNA structure (helix h33 in 16S rRNA) in bacteria, to an arrangement formed by three ribosomal proteins, eS10, eS12 and eS31, and a smaller h33 ribosomal RNA in eukaryotes. In this review, we describe the different structural and functional properties of the eukaryotic beak. We discuss the state-of-the-art concerning its composition and functional significance, including other processes apparently not related to translation, and the dynamics of its assembly in yeast and human cells. Moreover, we outline the current view about the relevance of the beak's components in human diseases, especially in ribosomopathies and cancer.

摘要

核糖体并非完全呈球形的机器。相反,它们由突出的结构突起和无数类似触手的突起组成,这些突起通常由核糖体 RNA 扩展片段和核糖体蛋白的 N 或 C 末端延伸组成。在高等真核核糖体中,这一点更为明显。在所有三个生命领域的小核糖体亚基中,最具特征的突起之一是所谓的喙,它与核糖体的功能和调节有关。在进化过程中,喙从细菌中所有核糖体 RNA 结构(16S rRNA 中的 helix h33)转变为由三个核糖体蛋白(eS10、eS12 和 eS31)以及较小的 h33 核糖体 RNA 组成的结构。在这篇综述中,我们描述了真核生物喙的不同结构和功能特性。我们讨论了其组成和功能意义的最新进展,包括与翻译无关的其他过程,以及其在酵母和人类细胞中的组装动力学。此外,我们概述了目前关于喙成分在人类疾病中的相关性的观点,特别是在核糖体病和癌症中。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8b5b/11274626/bb50f7fe5896/biomolecules-14-00882-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8b5b/11274626/2d10e4b6887c/biomolecules-14-00882-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8b5b/11274626/8ee339a4d3ee/biomolecules-14-00882-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8b5b/11274626/a52a4d3a84d8/biomolecules-14-00882-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8b5b/11274626/45d172e06cf6/biomolecules-14-00882-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8b5b/11274626/bb50f7fe5896/biomolecules-14-00882-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8b5b/11274626/2d10e4b6887c/biomolecules-14-00882-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8b5b/11274626/8ee339a4d3ee/biomolecules-14-00882-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8b5b/11274626/a52a4d3a84d8/biomolecules-14-00882-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8b5b/11274626/45d172e06cf6/biomolecules-14-00882-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8b5b/11274626/bb50f7fe5896/biomolecules-14-00882-g005.jpg

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本文引用的文献

1
Ribosome Assembly and Repair.核糖体组装与修复。
Annu Rev Cell Dev Biol. 2024 Oct;40(1):241-264. doi: 10.1146/annurev-cellbio-111822-113326. Epub 2024 Sep 21.
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Diamond-Blackfan anemia, the archetype of ribosomopathy: How distinct is it from the other constitutional ribosomopathies?钻石-黑范贫血,核糖体病的原型:它与其他先天性核糖体病有何不同?
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Mechanisms of Translation-coupled Quality Control.翻译偶联质量控制的机制
J Mol Biol. 2024 Mar 15;436(6):168496. doi: 10.1016/j.jmb.2024.168496. Epub 2024 Feb 15.
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A disease associated mutant reveals how Ltv1 orchestrates RP assembly and rRNA folding of the small ribosomal subunit head.一种与疾病相关的突变体揭示了 Ltv1 如何协调小核糖体亚基头部的 RP 组装和 rRNA 折叠。
PLoS Genet. 2023 Nov 1;19(11):e1010862. doi: 10.1371/journal.pgen.1010862. eCollection 2023 Nov.
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Concerted structural rearrangements enable RNA channeling into the cytoplasmic Ski238-Ski7-exosome assembly.协同的结构重排使 RNA 通道进入细胞质 Ski238-Ski7-exosome 组装。
Mol Cell. 2023 Nov 16;83(22):4093-4105.e7. doi: 10.1016/j.molcel.2023.09.037. Epub 2023 Oct 24.
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Dynamics of ribosome composition and ribosomal protein phosphorylation in immune signaling in Arabidopsis thaliana.拟南芥免疫信号转导中核糖体组成和核糖体蛋白磷酸化的动态变化。
Nucleic Acids Res. 2023 Nov 27;51(21):11876-11892. doi: 10.1093/nar/gkad827.
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Universal features of Nsp1-mediated translational shutdown by coronaviruses.冠状病毒通过 Nsp1 介导的翻译关闭的普遍特征。
Mol Cell. 2023 Oct 5;83(19):3546-3557.e8. doi: 10.1016/j.molcel.2023.09.002.
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Ribosomal Biogenesis and Heterogeneity in Development, Disease, and Aging.核糖体生物发生与发育、疾病和衰老中的异质性
Epigenomes. 2023 Aug 11;7(3):17. doi: 10.3390/epigenomes7030017.
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The induction of p53 correlates with defects in the production, but not the levels, of the small ribosomal subunit and stalled large ribosomal subunit biogenesis.p53 的诱导与小核糖体亚基产生的缺陷相关,但与小核糖体亚基的水平无关,并且与大型核糖体亚基生物发生停滞相关。
Nucleic Acids Res. 2023 Sep 22;51(17):9397-9414. doi: 10.1093/nar/gkad637.
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Molecular Highway Patrol for Ribosome Collisions.分子高速公路巡逻队:核糖体碰撞
Chembiochem. 2023 Oct 17;24(20):e202300264. doi: 10.1002/cbic.202300264. Epub 2023 Aug 10.