Zielinski Kara A, Dolamore Cole, Dalton Kevin M, Smith Nathan, Termini John, Henning Robert, Srajer Vukica, Hekstra Doeke R, Pollack Lois, Wilson Mark A
School of Applied and Engineering Physics, Cornell University, Ithaca, NY 14853.
Department of Biochemistry, University of Nebraska, Lincoln, NE 68588.
bioRxiv. 2024 Jul 20:2024.07.19.604369. doi: 10.1101/2024.07.19.604369.
DJ-1 (PARK7) is an intensively studied protein whose cytoprotective activities are dysregulated in multiple diseases. DJ-1 has been reported as having two distinct enzymatic activities in defense against reactive carbonyl species that are difficult to distinguish in conventional biochemical experiments. Here, we establish the mechanism of DJ-1 using a synchrotron-compatible version of mix-and-inject-serial crystallography (MISC), which was previously performed only at XFELs, to directly observe DJ-1 catalysis. We designed and used new diffusive mixers to collect time-resolved Laue diffraction data of DJ-1 catalysis at a pink beam synchrotron beamline. Analysis of structurally similar methylglyoxal-derived intermediates formed through the DJ-1 catalytic cycle shows that the enzyme catalyzes nearly two turnovers in the crystal and defines key aspects of its glyoxalase mechanism. In addition, DJ-1 shows allosteric communication between a distal site at the dimer interface and the active site that changes during catalysis. Our results rule out the widely cited deglycase mechanism for DJ-1 action and provide an explanation for how DJ-1 produces L-lactate with high chiral purity.
DJ-1(PARK7)是一种经过深入研究的蛋白质,其细胞保护活性在多种疾病中失调。据报道,DJ-1在抵御活性羰基化合物方面具有两种不同的酶活性,而这两种活性在传统生化实验中难以区分。在此,我们利用一种与同步加速器兼容的混合注入串行晶体学(MISC)方法来确定DJ-1的作用机制,该方法此前仅在X射线自由电子激光(XFEL)上进行过,用于直接观察DJ-1的催化过程。我们设计并使用了新型扩散混合器,在粉色光束同步加速器光束线上收集DJ-1催化过程的时间分辨劳厄衍射数据。对通过DJ-1催化循环形成的结构相似的甲基乙二醛衍生中间体的分析表明,该酶在晶体中催化了近两轮反应,并确定了其乙二醛酶机制的关键方面。此外,DJ-1在二聚体界面的一个远端位点和催化过程中发生变化的活性位点之间显示出变构通讯。我们的结果排除了被广泛引用的DJ-1作用的去糖基化酶机制,并解释了DJ-1如何产生高对映体纯度的L-乳酸。