Henning Robert W, Kosheleva Irina, Šrajer Vukica, Kim In-Sik, Zoellner Eric, Ranganathan Rama
BioCARS, Center for Advanced Radiation Sources, The University of Chicago, Chicago, Illinois 60637, USA.
Struct Dyn. 2024 Jan 31;11(1):014301. doi: 10.1063/4.0000238. eCollection 2024 Jan.
A major goal in biomedical science is to move beyond static images of proteins and other biological macromolecules to the internal dynamics underlying their function. This level of study is necessary to understand how these molecules work and to engineer new functions and modulators of function. Stemming from a visionary commitment to this problem by Keith Moffat decades ago, a community of structural biologists has now enabled a set of x-ray scattering technologies for observing intramolecular dynamics in biological macromolecules at atomic resolution and over the broad range of timescales over which motions are functionally relevant. Many of these techniques are provided by BioCARS, a cutting-edge synchrotron radiation facility built under Moffat leadership and located at the Advanced Photon Source at Argonne National Laboratory. BioCARS enables experimental studies of molecular dynamics with time resolutions spanning from 100 ps to seconds and provides both time-resolved x-ray crystallography and small- and wide-angle x-ray scattering. Structural changes can be initiated by several methods-UV/Vis pumping with tunable picosecond and nanosecond laser pulses, substrate diffusion, and global perturbations, such as electric field and temperature jumps. Studies of dynamics typically involve subtle perturbations to molecular structures, requiring specialized computational techniques for data processing and interpretation. In this review, we present the challenges in experimental macromolecular dynamics and describe the current state of experimental capabilities at this facility. As Moffat imagined years ago, BioCARS is now positioned to catalyze the scientific community to make fundamental advances in understanding proteins and other complex biological macromolecules.
生物医学科学的一个主要目标是超越蛋白质和其他生物大分子的静态图像,深入研究其功能背后的内在动力学。这种研究水平对于理解这些分子如何发挥作用以及设计新的功能和功能调节剂是必要的。几十年前,基思·莫法特对这个问题做出了富有远见的承诺,在此基础上,一群结构生物学家现已开发出一套X射线散射技术,用于在原子分辨率下以及在与功能相关的广泛时间尺度上观察生物大分子的分子内动力学。其中许多技术由生物应用研究协作组(BioCARS)提供,这是一个在莫法特领导下建造的前沿同步辐射设施,位于阿贡国家实验室的先进光子源处。BioCARS能够进行时间分辨率从100皮秒到秒的分子动力学实验研究,并提供时间分辨X射线晶体学以及小角和广角X射线散射。结构变化可以通过几种方法引发——用可调谐皮秒和纳秒激光脉冲进行紫外/可见泵浦、底物扩散以及全局扰动,如电场和温度跃变。动力学研究通常涉及对分子结构的细微扰动,这需要专门的计算技术来进行数据处理和解释。在这篇综述中,我们介绍了实验性大分子动力学中的挑战,并描述了该设施目前的实验能力状况。正如莫法特多年前所设想的那样,BioCARS现在正处于促使科学界在理解蛋白质和其他复杂生物大分子方面取得根本性进展的有利位置。