Université de Lorraine, INRAE, UMR1136, Interactions Arbres-Microorganismes, 54000 Nancy, France.
INRAE, UR1138, Biogéochimie des Ecosystèmes Forestiers, F-54280 Champenoux, France.
Int J Syst Evol Microbiol. 2024 Jul;74(7). doi: 10.1099/ijsem.0.006481.
Bacterial strain H4R21 was isolated from beech rhizosphere soil sampled in the forest experimental site of Montiers (Meuse, France). It effectively weathers minerals, hydrolyses chitin and produces quorum sensing signal molecules. The strain is aerobic and Gram-stain-negative. Phylogenetic analysis based on its 16S rRNA gene sequence indicated that strain H4R21 belongs to the genus with high sequence similarity to Ter10 (99.38 %), Ter6(98.97 %), Ter91 (98.76 %), RLT1W51 (98.46 %) and RXD178 (98.46 %), but less than 98 % similarity to other strains of the genus . The predominant quinone in H4R21 is ubiquinone-8 (Q8). The major polar lipids are diphosphatidylglycerol, phosphatidylethanolamine, diphosphatidylglycerol, phosphatidylglycerol and lipid. The major fatty acids identified were C, C 3-OH, C and Ccyclo. The digital DNA G+C content of the genomic DNA was 59.5 mol%. Furthermore, the strain could be clearly distinguished from its closely related type strains by a combination of phylogenomic and DNA-DNA hybridization results, and phenotypic characteristics. Therefore, strain H4R21 represents a novel species within the genus , for which the name sp. nov. is proposed, with strain H4R21 (=CFBP 9203=DSM 117599) as the type strain.
菌株 H4R21 是从法国默兹省蒙蒂耶森林实验地的山毛榉根际土壤中分离得到的。它能有效地风化矿物质、水解几丁质并产生群体感应信号分子。该菌株为需氧革兰氏阴性菌。基于其 16S rRNA 基因序列的系统发育分析表明,菌株 H4R21 属于 属,与 Ter10(99.38%)、Ter6(98.97%)、Ter91(98.76%)、RLT1W51(98.46%)和 RXD178(98.46%)的相似度较高,但与该属的其他菌株相似度低于 98%。H4R21 的主要醌类物质为泛醌-8(Q8)。主要极性脂类为双磷脂酰甘油、磷脂酰乙醇胺、双磷脂酰甘油、磷脂酰甘油和脂类。鉴定的主要脂肪酸为 C 16:0、C 18:1ω9c 和 C 17:0 cyclo。基因组 DNA 的 G+C 含量为 59.5mol%。此外,通过基因组系统发育分析和 DNA-DNA 杂交结果与表型特征的结合,该菌株可以与与其密切相关的模式菌株明显区分开来。因此,菌株 H4R21 代表了 属中的一个新种,建议将其命名为 sp. nov.,其模式菌株为 H4R21(=CFBP 9203=DSM 117599)。