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新种,一种从盐湖沉积物富集系统中分离得到的轻度嗜盐细菌。

sp. nov., a slightly halophilic bacterium isolated from an enrichment system with saline lake sediment.

机构信息

State Key Laboratory of Desert and Oasis Ecology, Key Laboratory of Ecological Safety and Sustainable Development in Arid Lands, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, 830011, PR China.

Xinjiang Key Laboratory of Biodiversity Conservation and Application in Arid Lands, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, 830011, PR China.

出版信息

Int J Syst Evol Microbiol. 2024 Apr;74(4). doi: 10.1099/ijsem.0.006340.

Abstract

A Gram-stain-negative, non-motile, and slightly halophilic alphaproteobacterium, designated strain EGI FJ00035, was isolated from enrichment sediment samples of a saline lake in Xinjiang Uygur Autonomous Region, PR China. The taxonomic position of the isolate was determined using the polyphasic taxonomic and phylogenomic analyses. Phylogenetic analysis based on the 16S rRNA gene sequences indicated that strain EGI FJ00035 formed a distinct clade with '' UJN715 and '' lm93 with sequence similarities of 98.44 and 98.22 %, respectively, while sharing less than 96.7 % with other valid type strains. The novel isolate could be distinguished from other species of the genus by its distinct phenotypic, physiological, and genotypic characteristics. Optimal growth of strain EGI FJ00035 occurred on marine agar 2216 at pH 7.0 and 30 °C. The major respiratory quinone was Q-10, while the major fatty acids (>5 %) were C cyclo ω8, summed feature 8 (C ω6 and/or C ω7), C, C, and iso-C. The detected polar lipids included diphosphatidylglycerol, phosphatidylcholine, phosphatidylethanolamine, phosphatidylglycerol, unidentified aminophospholipids, unidentified glycolipids, and an unidentified lipid. Based on its genome sequence, the G+C content of strain EGI FJ00035 was 63.2 mol%. The average nucleotide identity, average amino acid identity, and digital DNA-DNA hybridization values of strain EGI FJ00035 against related members of the genus were below the thresholds for delineation of a novel species. According our polyphasic taxonomic data, strain EGI FJ00035 represents a new species of the genus , for which the name sp. nov. is proposed. The type strain of the proposed novel isolate is EGI FJ00035 (=KCTC 92251=CGMCC 1.19480).

摘要

一株革兰氏阴性、非运动、轻度嗜盐的α变形菌,命名为 EGI FJ00035 菌株,从中国新疆维吾尔自治区盐湖的富积沉积物样品中分离得到。通过多相分类学和系统基因组学分析确定了该分离株的分类地位。基于 16S rRNA 基因序列的系统发育分析表明,菌株 EGI FJ00035 与“UJN715 和“lm93 形成一个独特的分支,与它们的序列相似性分别为 98.44%和 98.22%,而与其他有效型菌株的序列相似性低于 96.7%。该新分离株可通过其独特的表型、生理和遗传特征与属内的其他种区分开来。EGI FJ00035 菌株的最佳生长条件为 pH 7.0 和 30°C 的海洋琼脂 2216。主要呼吸醌为 Q-10,主要脂肪酸(>5%)为 C 环 ω8、特征脂肪酸 8(C ω6 和/或 C ω7)、C 16:0、C 18:1ω7c 和 iso-C 15:0。检测到的极性脂包括双磷脂酰甘油、磷脂酰胆碱、磷脂酰乙醇胺、磷脂酰甘油、未鉴定的氨基磷脂、未鉴定的糖脂和未鉴定的脂。根据其基因组序列,EGI FJ00035 菌株的 G+C 含量为 63.2mol%。与属内相关成员相比,EGI FJ00035 菌株的平均核苷酸同一性、平均氨基酸同一性和数字 DNA-DNA 杂交值均低于新型物种的界定阈值。根据我们的多相分类数据,EGI FJ00035 菌株代表了属的一个新种,建议命名为“ sp. nov. ”。该新分离株的模式菌株为 EGI FJ00035(=KCTC 92251=CGMCC 1.19480)。

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