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蛋白质谷氨酰胺和天冬酰胺侧链中NH基团的横向弛豫优化光谱学。

Transverse relaxation optimized spectroscopy of NH groups in glutamine and asparagine side chains of proteins.

作者信息

Tugarinov Vitali, Torricella Francesco, Ying Jinfa, Clore G Marius

机构信息

Laboratory of Chemical Physics, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, MD, 20892-0520, USA.

出版信息

J Biomol NMR. 2024 Dec;78(4):199-213. doi: 10.1007/s10858-024-00445-8. Epub 2024 Jul 31.

Abstract

A transverse relaxation optimized spectroscopy (TROSY) approach is described for the optimal detection of NH groups in asparagine and glutamine side chains of proteins. Specifically, we have developed NMR experiments for isolating the slow-relaxing N and H components of NH multiplets. Although even modest sensitivity gains in 2D NH-TROSY correlation maps compared to their decoupled NH-HSQC counterparts can be achieved only occasionally, substantial improvements in resolution of the NMR spectra are demonstrated for asparagine and glutamine NH sites of a buried cavity mutant, L99A, of T4 lysozyme at 5 ºC. The NH-TROSY approach is applied to CPMG relaxation dispersion measurements at the side chain NH positions of the L99A T4 lysozyme mutant - a model system for studies of the role of protein dynamics in ligand binding.

摘要

本文描述了一种横向弛豫优化光谱法(TROSY),用于最佳检测蛋白质中天冬酰胺和谷氨酰胺侧链中的NH基团。具体而言,我们开发了核磁共振实验,用于分离NH多重峰中弛豫缓慢的N和H成分。尽管与去耦的NH-HSQC对应图谱相比,二维NH-TROSY相关图谱偶尔才能实现适度的灵敏度提高,但在5℃下,对于T4溶菌酶的埋藏腔突变体L99A的天冬酰胺和谷氨酰胺NH位点,核磁共振谱的分辨率有了显著提高。NH-TROSY方法应用于L99A T4溶菌酶突变体侧链NH位置的CPMG弛豫色散测量——这是一个用于研究蛋白质动力学在配体结合中作用的模型系统。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/14f0/11614955/5454406b190c/10858_2024_445_Fig1_HTML.jpg

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