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应对全基因组关联研究中的重叠样本挑战:元归约方法。

Addressing overlapping sample challenges in genome-wide association studies: Meta-reductive approach.

作者信息

Rajabli Farid, Emekci Azra

机构信息

John P. Hussman Institute for Human Genomics, University of Miami Miller School of Medicine, Miami, FL, United States of America.

Dr. John T Macdonald Foundation Department of Human Genetics, University of Miami Miller School of Medicine, Miami, FL, United States of America.

出版信息

PLoS One. 2024 Aug 1;19(8):e0296207. doi: 10.1371/journal.pone.0296207. eCollection 2024.

Abstract

Polygenic risk scores (PRS) are instrumental in genetics, offering insights into an individual level genetic risk to a range of diseases based on accumulated genetic variations. These scores rely on Genome-Wide Association Studies (GWAS). However, precision in PRS is often challenged by the requirement of extensive sample sizes and the potential for overlapping datasets that can inflate PRS calculations. In this study, we present a novel methodology, Meta-Reductive Approach (MRA), that was derived algebraically to adjust GWAS results, aiming to neutralize the influence of select cohorts. Our approach recalibrates summary statistics using algebraic derivations. Validating our technique with datasets from Alzheimer disease studies, we showed that the summary statistics of the MRA and those derived from individual-level data yielded the exact same values. This innovative method offers a promising avenue for enhancing the accuracy of PRS, especially when derived from meta-analyzed GWAS data.

摘要

多基因风险评分(PRS)在遗传学中具有重要作用,它基于累积的基因变异,为个体层面患一系列疾病的遗传风险提供见解。这些评分依赖于全基因组关联研究(GWAS)。然而,PRS的准确性常常受到大样本量要求以及可能导致PRS计算膨胀的重叠数据集的挑战。在本研究中,我们提出了一种新方法——元还原法(MRA),该方法通过代数推导得出,用于调整GWAS结果,旨在消除特定队列的影响。我们的方法使用代数推导重新校准汇总统计数据。通过使用阿尔茨海默病研究的数据集验证我们的技术,我们发现MRA的汇总统计数据与从个体层面数据得出的汇总统计数据完全相同。这种创新方法为提高PRS的准确性提供了一条有前景的途径,特别是当它源自荟萃分析的GWAS数据时。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6625/11293628/aca35da3f285/pone.0296207.g001.jpg

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