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用于增强肺鳞状细胞癌预后评估和治疗策略的二硫化物依赖性细胞坏死相关lncRNA预后特征的开发

Development of a disulfidptosis-related lncRNA prognostic signature for enhanced prognostic assessment and therapeutic strategies in lung squamous cell carcinoma.

作者信息

Zhu Ankang, Zong Yan, Gao Xingcai

机构信息

The Fifth Affiliated Hospital of Zhengzhou University, Zhengzhou University, Zhengzhou, China.

出版信息

Sci Rep. 2024 Aug 1;14(1):17804. doi: 10.1038/s41598-024-68423-6.

DOI:10.1038/s41598-024-68423-6
PMID:39090162
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11294474/
Abstract

Limited treatment options and poor prognosis present significant challenges in the treatment of lung squamous cell carcinoma (LUSC). Disulfidptosis impacts cancer progression and prognosis. We developed a prognostic signature using disulfidptosis-related long non-coding RNAs (lncRNAs) to predict the prognosis of LUSC patients. Gene expression matrices and clinical information for LUSC were downloaded from the TCGA database. Co-expression analysis identified 209 disulfidptosis-related lncRNAs. LASSO-Cox regression analysis identified nine key lncRNAs, forming the basis for establishing a prognostic model. The model's validity was confirmed by Kaplan-Meier and ROC curves. Cox regression analysis identified the risk score (RS) as an independent prognostic factor inversely correlated with overall survival. A nomogram based on the RS demonstrated good predictive performance for LUSC patient prognosis. The relationship between RS and immune function was explored using ESTIMATE, CIBERSORT, and ssGSEA algorithms. According to the TIDE database, a negative correlation was found between RS and immune therapy responsiveness. The GDSC database revealed that 49 drugs were beneficial for the low-risk group and 25 drugs for the high-risk group. Silencing C10orf55 expression in SW900 cells reduced invasiveness and migration potential. In summary, this lncRNA model based on TCGA-LUSC data effectively predicts prognosis and assists clinical decision-making.

摘要

在肺鳞状细胞癌(LUSC)的治疗中,治疗选择有限且预后较差带来了重大挑战。二硫化物诱导的细胞程序性坏死影响癌症进展和预后。我们利用与二硫化物诱导的细胞程序性坏死相关的长链非编码RNA(lncRNA)开发了一种预后特征,以预测LUSC患者的预后。从TCGA数据库下载了LUSC的基因表达矩阵和临床信息。共表达分析确定了209个与二硫化物诱导的细胞程序性坏死相关的lncRNA。LASSO-Cox回归分析确定了9个关键lncRNA,为建立预后模型奠定了基础。Kaplan-Meier曲线和ROC曲线证实了该模型的有效性。Cox回归分析确定风险评分(RS)是与总生存期呈负相关的独立预后因素。基于RS的列线图对LUSC患者的预后显示出良好的预测性能。使用ESTIMATE、CIBERSORT和ssGSEA算法探讨了RS与免疫功能之间的关系。根据TIDE数据库,发现RS与免疫治疗反应性呈负相关。GDSC数据库显示,49种药物对低风险组有益,25种药物对高风险组有益。在SW900细胞中沉默C10orf55表达可降低侵袭性和迁移潜能。总之,这种基于TCGA-LUSC数据的lncRNA模型可有效预测预后并辅助临床决策。

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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/040d/11294474/de27abfb39b4/41598_2024_68423_Fig1_HTML.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/040d/11294474/f2b496815c82/41598_2024_68423_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/040d/11294474/a94dfbc187d3/41598_2024_68423_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/040d/11294474/e8151b81536d/41598_2024_68423_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/040d/11294474/a1963dc66b16/41598_2024_68423_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/040d/11294474/87c7c8efd4dd/41598_2024_68423_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/040d/11294474/8c49bf9efd2c/41598_2024_68423_Fig8_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/040d/11294474/fed7c556dc23/41598_2024_68423_Fig9_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/040d/11294474/9c82c564c980/41598_2024_68423_Fig10_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/040d/11294474/07fc3d7fb2e1/41598_2024_68423_Fig11_HTML.jpg

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