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某物种中基因家族的全基因组鉴定与表达分析 。(你提供的原文不完整,缺少具体物种等关键信息,这是基于现有内容的翻译)

Genome-wide identification and expression analysis of gene family in .

作者信息

Liu Sha, Chen Ting, Li Xin, Cui Junjun, Tian Yinshuai

机构信息

School of Landscape and Ecological Engineering, Hebei University of Engineering, Handan, China.

出版信息

Front Genet. 2024 Jul 18;15:1432376. doi: 10.3389/fgene.2024.1432376. eCollection 2024.

Abstract

The Epidermal Patterning Factor/EPF-like (EPF/EPFL) family encodes a specific type of secreted protein in plants and plays an important role in plant growth and development, especially in the process of morphogenesis. To investigate the characteristics of gene family members and their regulatory functions in stomatal development of , a total of 15 family genes were identified. Then the gene structure, chromosome location, phylogenetic relationship, protein conserved domain and gene expression profile were analyzed. According to phylogenetic analysis, PtEPF/EPFL can be classified into four groups. The gene structure and protein conservation motifs within the EPF family indicate the high conservation of the sequence. The promoter region of was found to contain cis-elements in response to stress and plant hormones. In addition, RT-qPCR results indicated that the have a differentially expressed in different tissues. Under drought stress treatment, a substantial upregulation was observed in the majority of members, suggesting their potential involvement in drought response. These results provide a theoretical basis for future exploration of the characteristics and functions of more genes.

摘要

表皮模式因子/类EPF(EPF/EPFL)家族在植物中编码一种特定类型的分泌蛋白,在植物生长发育尤其是形态发生过程中发挥重要作用。为了研究该基因家族成员的特征及其在杨树气孔发育中的调控功能,共鉴定出15个该家族基因。随后对基因结构、染色体定位、系统发育关系、蛋白质保守结构域和基因表达谱进行了分析。根据系统发育分析,PtEPF/EPFL可分为四组。EPF家族内的基因结构和蛋白质保守基序表明该序列具有高度保守性。发现杨树的启动子区域含有响应胁迫和植物激素的顺式作用元件。此外,RT-qPCR结果表明这些基因在不同组织中差异表达。在干旱胁迫处理下,大多数家族成员显著上调,表明它们可能参与干旱响应。这些结果为今后进一步探索更多杨树基因的特征和功能提供了理论依据。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ba50/11291230/9c5c1c5ee78e/fgene-15-1432376-g001.jpg

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