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甘蓝型油菜(L.)Moench中EPF基因家族的全基因组鉴定与分析

Genome-Wide Identification and Analysis of the EPF Gene Family in (L.) Moench.

作者信息

Jiao Zhiyin, Wang Jinping, Shi Yannan, Wang Zhifang, Zhang Jing, Du Qi, Liu Bocheng, Jia Xinyue, Niu Jingtian, Gu Chun, Lv Peng

机构信息

Institute of Millet Crops, Hebei Academy of Agriculture and Forestry Sciences/Hebei Branch of National Sorghum Improvement Center/Key Laboratory of Genetic Improvement and Utilization for Featured Coarse Cereals (Co-Construction by Ministry and Province), Ministry of Agriculture and Rural Affairs/Key Laboratory of Minor Cereal Crops of Hebei Province, Shijiazhuang 050035, China.

Hebei Seed Management Station, Shijiazhuang 050031, China.

出版信息

Plants (Basel). 2023 Nov 20;12(22):3912. doi: 10.3390/plants12223912.

Abstract

The EPIDERMAL PATTERNING FACTOR (EPF) plays a crucial role in plant response to abiotic stress. While the EPF has been extensively studied in model plants such as , there is a lack of research on identifying EPF genes in the whole sorghum genome and its response to drought stress. In this study, we employed bioinformatics tools to identify 12 EPF members in sorghum. Phylogenetic tree analysis revealed that SbEPFs can be categorized into four branches. Further examination of the gene structure and protein conservation motifs of EPF family members demonstrated the high conservation of the SbEPF sequence. The promoter region of SbEPFs was found to encompass cis-elements responsive to stress and plant hormones. Moreover, real-time fluorescence quantitative results indicated that the SbEPFs have a tissue-specific expression. Under drought stress treatment, most SbEPF members were significantly up-regulated, indicating their potential role in drought response. Our research findings establish a foundation for investigating the function of SbEPFs and offer candidate genes for stress-resistant breeding and enhanced production in sorghum.

摘要

表皮模式因子(EPF)在植物对非生物胁迫的响应中起着关键作用。虽然EPF已在拟南芥等模式植物中得到广泛研究,但在整个高粱基因组中鉴定EPF基因及其对干旱胁迫的响应方面缺乏研究。在本研究中,我们利用生物信息学工具在高粱中鉴定出12个EPF成员。系统发育树分析表明,SbEPFs可分为四个分支。对EPF家族成员的基因结构和蛋白质保守基序的进一步研究表明,SbEPF序列具有高度保守性。发现SbEPFs的启动子区域包含对应激和植物激素有响应的顺式元件。此外,实时荧光定量结果表明,SbEPFs具有组织特异性表达。在干旱胁迫处理下,大多数SbEPF成员显著上调,表明它们在干旱响应中具有潜在作用。我们的研究结果为研究SbEPFs的功能奠定了基础,并为高粱的抗逆育种和提高产量提供了候选基因。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/14c8/10674733/16d6c34bd1de/plants-12-03912-g001.jpg

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