Christie Swamidurai Arul Diana, Hariharan Suneetha, Chakraborti Sohini, Srinivasan Narayanaswamy, Madanan Madathiparambil Gopalakrishnan
Molecular Biophysics Unit, Indian Institute of Science, Bangalore, Karnataka 560012, India.
Department of Biochemistry, ICMR Regional Medical Research Centre, Port Blair, Andaman and Nicobar Islands 744103, India.
ACS Omega. 2024 Jul 22;9(30):32717-32726. doi: 10.1021/acsomega.4c02535. eCollection 2024 Jul 30.
Leptospirosis is one of the re-emerging zoonotic diseases, especially in tropical regions. Many antibiotics are used to treat leptospirosis, but there are no scientific evidence-based guidelines or systematic clinical trials for using these drugs. A bioinformatics approach was made to shortlist some Food and Drug Administration (FDA) of the United States of America-approved and currently used drugs for leptospirosis. The existing drugs from the Drug Bank database, which are currently not used for leptospirosis, were selected to identify their target proteins and binding sites using bioinformatics methods. Orthologues of these target proteins were selected from the proteome database of . The similar sites and their interactions with the drugs were validated and recommended for use in leptospirosis. Further, the sensitivity of recommended drugs was also validated in vitro. The sequences and structures of these proteins were compared under strictly controlled parameters and shortlisted Gatifloxacin, Imipenem, Latamoxef, Doripenem, Tigecycline, and Lactams as repurposable drugs for leptospirosis. An in vitro validation of the drugs showed significant antileptospiral activity in 12 serovars with low IC concentrations and also showed that the IC values varied across serovars. Further, suitable proteins under the concept of "One Target, Many Drugs" identified DNA gyrase subunit A (Q72WD1), 30S ribosomal protein S9 (Q72U99), and 30S ribosomal protein S12 (Q72UA6), and these proteins were found across the pathogenic, saprophytic, and intermediate species of . We describe a method to find repurposable drugs from the approved list that are not currently used to treat leptospirosis and validate them to be taken forward for systematic clinical trials specific to leptospirosis for recommendations in clinical use.
钩端螺旋体病是一种再度出现的人畜共患病,在热带地区尤为常见。许多抗生素被用于治疗钩端螺旋体病,但对于使用这些药物,尚无基于科学证据的指南或系统性临床试验。采用生物信息学方法筛选了一些美国食品药品监督管理局(FDA)批准且目前用于治疗钩端螺旋体病的药物。从药物银行数据库中选取目前未用于治疗钩端螺旋体病的现有药物,利用生物信息学方法确定其靶蛋白和结合位点。从……的蛋白质组数据库中选取这些靶蛋白的直系同源物。对相似位点及其与药物的相互作用进行验证,并推荐用于钩端螺旋体病的治疗。此外,还在体外验证了推荐药物的敏感性。在严格控制的参数下比较这些蛋白质的序列和结构,筛选出加替沙星、亚胺培南、拉氧头孢、多尼培南、替加环素和内酰胺类药物作为可重新用于治疗钩端螺旋体病的药物。药物的体外验证表明,这些药物在12个血清型中具有显著的抗钩端螺旋体活性,且最低抑菌浓度较低,同时还表明最低抑菌浓度值在不同血清型中有所不同。此外,在“一靶多药”概念下确定了合适的蛋白质,即DNA促旋酶亚基A(Q72WD1)、30S核糖体蛋白S9(Q72U99)和30S核糖体蛋白S12(Q72UA6),这些蛋白质存在于……的致病、腐生和中间物种中。我们描述了一种从批准列表中寻找目前未用于治疗钩端螺旋体病的可重新利用药物的方法,并对其进行验证,以便推进针对钩端螺旋体病的系统性临床试验,为临床应用提供建议。