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基于线性解混和深度神经网络集成的组织病理学高光谱图像混合脑肿瘤分类

Hybrid brain tumor classification of histopathology hyperspectral images by linear unmixing and an ensemble of deep neural networks.

作者信息

Cruz-Guerrero Inés A, Campos-Delgado Daniel Ulises, Mejía-Rodríguez Aldo R, Leon Raquel, Ortega Samuel, Fabelo Himar, Camacho Rafael, Plaza Maria de la Luz, Callico Gustavo

机构信息

Facultad de Ciencias Universidad Autonoma de San Luis Potosí (UASLP) San Luis Potosi Mexico.

Department of Biostatistics and Informatics, Colorado School of Public Health University of Colorado Anschutz Medical Campus Colorado USA.

出版信息

Healthc Technol Lett. 2024 Jun 18;11(4):240-251. doi: 10.1049/htl2.12084. eCollection 2024 Aug.

DOI:10.1049/htl2.12084
PMID:39100499
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11294933/
Abstract

Hyperspectral imaging has demonstrated its potential to provide correlated spatial and spectral information of a sample by a non-contact and non-invasive technology. In the medical field, especially in histopathology, HSI has been applied for the classification and identification of diseased tissue and for the characterization of its morphological properties. In this work, we propose a hybrid scheme to classify non-tumor and tumor histological brain samples by hyperspectral imaging. The proposed approach is based on the identification of characteristic components in a hyperspectral image by linear unmixing, as a features engineering step, and the subsequent classification by a deep learning approach. For this last step, an ensemble of deep neural networks is evaluated by a cross-validation scheme on an augmented dataset and a transfer learning scheme. The proposed method can classify histological brain samples with an average accuracy of 88%, and reduced variability, computational cost, and inference times, which presents an advantage over methods in the state-of-the-art. Hence, the work demonstrates the potential of hybrid classification methodologies to achieve robust and reliable results by combining linear unmixing for features extraction and deep learning for classification.

摘要

高光谱成像已展现出通过非接触、非侵入性技术提供样本相关空间和光谱信息的潜力。在医学领域,尤其是组织病理学中,高光谱成像已被用于病变组织的分类和识别及其形态学特性的表征。在这项工作中,我们提出了一种通过高光谱成像对非肿瘤和肿瘤组织学脑样本进行分类的混合方案。所提出的方法基于作为特征工程步骤的线性分解在高光谱图像中识别特征成分,以及随后通过深度学习方法进行分类。对于最后这一步,通过交叉验证方案在增强数据集上评估深度神经网络集成,并采用迁移学习方案。所提出的方法能够以88%的平均准确率对组织学脑样本进行分类,并且降低了变异性、计算成本和推理时间,这比现有技术方法具有优势。因此,这项工作证明了混合分类方法通过结合用于特征提取的线性分解和用于分类的深度学习来实现稳健可靠结果的潜力。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ce4d/11294933/b0792d7a2f41/HTL2-11-240-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ce4d/11294933/c189d9ba5da2/HTL2-11-240-g007.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ce4d/11294933/1de97d2d78d7/HTL2-11-240-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ce4d/11294933/1860efebfeb4/HTL2-11-240-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ce4d/11294933/b0792d7a2f41/HTL2-11-240-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ce4d/11294933/c189d9ba5da2/HTL2-11-240-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ce4d/11294933/47c35b2af8b3/HTL2-11-240-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ce4d/11294933/fb86513ba40d/HTL2-11-240-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ce4d/11294933/ed087b6daddb/HTL2-11-240-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ce4d/11294933/1de97d2d78d7/HTL2-11-240-g001.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ce4d/11294933/b0792d7a2f41/HTL2-11-240-g003.jpg

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Tumor cell identification and classification in esophageal adenocarcinoma specimens by hyperspectral imaging.运用高光谱成像技术对食管腺癌标本中的肿瘤细胞进行鉴定和分类。
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