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分离和鉴定科内属于 亚科的一种新型 噬菌体。

Isolation and characterization of ; a novel clade of phages within the subfamily .

机构信息

APC Microbiome Ireland and School of Microbiology, University College Cork, Cork, Ireland.

Max-Planck-Institute for Terrestrial Microbiology, Marburg, Germany.

出版信息

Microbiol Spectr. 2024 Sep 3;12(9):e0059224. doi: 10.1128/spectrum.00592-24. Epub 2024 Aug 5.

Abstract

UNLABELLED

is a commensal inhabitant of the mammalian gut microbiota, frequently associated with various gastrointestinal diseases. There is increasing interest in comprehending the variety of bacteriophages (phages) that target this bacterium, as such insights could pave the way for their potential use in therapeutic applications. Here, we report the isolation and characterization of four newly identified infecting tailed phages (W70, A7-1, A5-4, and A73) that were found to constitute a novel genus, , within the subfamily . Genomes of these phages ranged from 137 kbp to 145 kbp, with a GC content of 41 mol%. They possess a maximum nucleotide similarity of 30% with phages of the closest phylogenetic genus, , while displaying limited homology to other genera of the family. Host range analysis showed that these phages have limited activity against a panel of strains, infecting 6 out of 16 tested isolates, regardless of their phylotype. Electrospray ionization-tandem mass spectrometry (ESI-MS/MS) was performed on the virion of phage W70, allowing the identification of 28 structural proteins, 19 of which were shared with phages of other genera of family. The greatest diversity was identified with proteins forming tail fiber structures, likely indicating the adaptation of virions of each phage genus of this subfamily for the recognition of their target receptor on host cells. The findings of this study provide greater insights into the phages of the subfamily , contributing to the pool of knowledge currently known about these phages.

IMPORTANCE

is a well-known bacterium that inhabits diverse ecological niches, including the mammalian gut microbiota. Certain strains are associated with gastrointestinal diseases, and there is a growing interest in using bacteriophages, viruses that infect bacteria, to combat bacterial infections. Here, we describe the isolation and characterization of four novel bacteriophages that constitute a new genus, , within the subfamily . We conducted mass spectrometry on virions of a representative phage of this novel clade and compared it to other phages within the subfamily. Our analysis shows that virion structure is highly conserved among all phages, except for proteins related to tail fiber structures implicated in the host range. These findings provide greater insights into the phages of the subfamily , contributing to the existing pool of knowledge about these phages.

摘要

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是哺乳动物肠道微生物群的共生体,常与各种胃肠道疾病有关。人们越来越感兴趣的是理解针对这种细菌的各种噬菌体(噬菌体),因为这些见解可能为它们在治疗应用中的潜在用途铺平道路。在这里,我们报告了四个新鉴定的 感染尾噬菌体(W70、A7-1、A5-4 和 A73)的分离和特性,这些噬菌体被发现构成了一个新属, ,属于亚科 。这些噬菌体的基因组大小从 137 kbp 到 145 kbp 不等,GC 含量为 41 mol%。它们与最接近的系统发育属的噬菌体的最大核苷酸相似性为 30%,而与 家族的其他属显示出有限的同源性。宿主范围分析表明,这些噬菌体对一组 菌株的活性有限,感染了 16 个测试分离株中的 6 个,无论其 phylotype 如何。对噬菌体 W70 的病毒体进行了电喷雾电离串联质谱(ESI-MS/MS)分析,鉴定出 28 种结构蛋白,其中 19 种与其他属的噬菌体共有。形成尾纤维结构的蛋白质表现出最大的多样性,这可能表明该亚家族每个噬菌体属的病毒体适应于识别其靶细胞受体。这项研究的结果提供了对 亚科噬菌体的更深入了解,有助于增加当前对这些噬菌体的了解。

重要性

是一种众所周知的细菌,栖息在多种生态位,包括哺乳动物肠道微生物群。某些菌株与胃肠道疾病有关,人们越来越感兴趣地使用噬菌体,即感染细菌的病毒,来对抗细菌感染。在这里,我们描述了四个新的 噬菌体的分离和特性,这些噬菌体构成了一个新属, ,属于 亚科。我们对代表这个新分支的噬菌体的病毒体进行了质谱分析,并将其与亚科中的其他噬菌体进行了比较。我们的分析表明,除了与尾纤维结构相关的蛋白质(这些蛋白质与宿主范围有关)外,所有噬菌体的病毒体结构都高度保守。这些发现提供了对 亚科噬菌体的更深入了解,有助于增加对这些噬菌体的现有了解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/60f0/11370258/5ffd8bdf9bfb/spectrum.00592-24.f001.jpg

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