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日本特有蒲公英(菊科)的完整叶绿体基因组

The complete chloroplast genome of (Asteraceae), a Japanese endemic dandelion.

作者信息

Mouri Haruka, Tatsumi Mizuki, Nishino Takako, Suzuki Takeshi, Morita Tatsuyoshi, Ito Motomi, Iwasaki Takaya

机构信息

Graduate School of Humanities and Sciences, Ochanomizu University, Bunkyo-ku, Japan.

Regional Environmental Planning Inc., Sapporo-shi, Japan.

出版信息

Mitochondrial DNA B Resour. 2024 Aug 7;9(8):1015-1019. doi: 10.1080/23802359.2024.2387258. eCollection 2024.

Abstract

, a perennial herb of the Asteraceae family, exhibits both tetraploid and pentaploid in Japan. This study sequenced and characterized the complete chloroplast genome of , revealing a 151,451 bp sequence with a typical quadripartite structure, comprising one large single-copy (LSC) region of 84,052 bp, one small single-copy (SSC) region of 18,541 bp, and two inverted repeat (IR) regions, IRa and IRb, each 24,429 bp in length. The chloroplast genome, excluding duplicates, contained 113 unique genes, including 79 protein-coding genes, 30 transfer RNA genes, and four ribosomal RNA genes. The GC content of this genome was 37.7%. Phylogenetic analysis revealed that is most closely related to , with the chloroplast genome sequences being nearly identical, differing by only one nucleotide. These findings suggest that the maternal lineage of likely originates from or its closely related species.

摘要

菊科多年生草本植物,在日本同时存在四倍体和五倍体。本研究对该植物的叶绿体全基因组进行了测序和特征分析,揭示了一个151,451 bp的序列,具有典型的四分体结构,包括一个84,052 bp的大单拷贝(LSC)区域、一个18,541 bp的小单拷贝(SSC)区域以及两个长度均为24,429 bp的反向重复(IR)区域,即IRa和IRb。叶绿体基因组(不包括重复序列)包含113个独特基因,包括79个蛋白质编码基因、30个转运RNA基因和4个核糖体RNA基因。该基因组的GC含量为37.7%。系统发育分析表明,与关系最为密切,叶绿体基因组序列几乎相同,仅相差一个核苷酸。这些发现表明,的母系谱系可能起源于或其近缘物种。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fdef/11308969/eece9812b8f4/TMDN_A_2387258_F0001_C.jpg

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