Tulane Center for Biomedical Informatics and Genomics, Tulane University, New Orleans, Louisiana 70112, United States.
Division of Biomedical Informatics and Genomics, Deming Department of Medicine, Tulane University, New Orleans, Louisiana 70112, United States.
Nano Lett. 2024 Aug 21;24(33):10228-10236. doi: 10.1021/acs.nanolett.4c02568. Epub 2024 Aug 9.
Modern nanotechnology has generated numerous datasets from and studies on nanomaterials, with some available on nanoinformatics portals. However, these existing databases lack the digital data and tools suitable for machine learning studies. Here, we report a nanoinformatics platform that accurately annotates nanostructures into machine-readable data files and provides modeling toolkits. This platform, accessible to the public at https://vinas-toolbox.com/, has annotated nanostructures of 14 material types. The associated nanodescriptor data and assay test results are appropriate for modeling purposes. The modeling toolkits enable data standardization, data visualization, and machine learning model development to predict properties and bioactivities of new nanomaterials. Moreover, a library of virtual nanostructures with their predicted properties and bioactivities is available, directing the synthesis of new nanomaterials. This platform provides a data-driven computational modeling platform for the nanoscience community, significantly aiding in the development of safe and effective nanomaterials.
现代纳米技术从 和 研究中产生了大量的纳米材料数据集,其中一些可在纳米信息学门户上获得。然而,这些现有的数据库缺乏适合机器学习研究的数字数据和工具。在这里,我们报告了一个纳米信息学平台,该平台可以将纳米结构准确地标注为机器可读的数据文件,并提供建模工具包。该平台可在 https://vinas-toolbox.com/ 上公开访问,已经标注了 14 种材料类型的纳米结构。相关的纳米描述符数据和检测测试结果适合用于建模。建模工具包可以实现数据标准化、数据可视化以及机器学习模型的开发,以预测新纳米材料的性质和生物活性。此外,还提供了具有预测性质和生物活性的虚拟纳米结构库,指导新纳米材料的合成。该平台为纳米科学领域提供了一个数据驱动的计算建模平台,极大地促进了安全有效的纳米材料的开发。