Department of Food Science, College of Food Science and Technology, Yunnan Agricultural University, Kunming, 650201, Yunnan, China.
Yunnan Normal University, Kunming, 650092, Yunnan, China.
Curr Microbiol. 2024 Aug 11;81(10):303. doi: 10.1007/s00284-024-03834-2.
Quorum sensing (QS) can regulate the production of multiple functional factors in bacteria, but the process of identifying its regulatory targets is very complex and labor-intensive. In this study, an efficient and rapid method to find QS targets through prediction was used. The genome of Lactiplantibacillus plantarum (L. plantarum) L3 was sequenced and characterized, and then linked the L. plantarum L3 genome to the STRING database for QS system regulatory target prediction. A total of 3,167,484 base pairs (bps) were examined from the genome of L. plantarum L3, and 30 QS-related genes were discovered (including luxS). The STRING database prediction indicated that the 30 QS-related genes are mainly involved in the regulation of nine metabolic pathways. Furthermore, metE, metK, aroB, cysE, and birA1 were predicted to be regulatory targets of the LuxS/AI-2 QS system, and these five targets were validated based on quantitative real-time PCR and content determination. Successful elucidation of the LuxS/AI-2 QS system's key targets and regulation mechanism in L. plantarum L3 demonstrated the effectiveness of the new approach for predicting QS targets and provides a scientific basis for future work on improving regulation of functional factor production.
群体感应(QS)可以调节细菌中多种功能因子的产生,但识别其调节靶点的过程非常复杂和繁琐。在这项研究中,使用了一种通过预测来寻找 QS 靶点的高效快速方法。对植物乳杆菌(L. plantarum)L3 的基因组进行了测序和特征描述,然后将 L. plantarum L3 的基因组与 STRING 数据库相连,以预测 QS 系统调节靶点。从 L. plantarum L3 的基因组中检查了总共 3167484 个碱基对(bps),并发现了 30 个与 QS 相关的基因(包括 luxS)。STRING 数据库预测表明,这 30 个与 QS 相关的基因主要参与了九个代谢途径的调节。此外,metE、metK、aroB、cysE 和 birA1 被预测为 LuxS/AI-2 QS 系统的调节靶点,并且基于定量实时 PCR 和含量测定对这五个靶点进行了验证。成功阐明了 L. plantarum L3 中 LuxS/AI-2 QS 系统的关键靶点和调控机制,证明了预测 QS 靶点的新方法的有效性,并为未来改善功能因子生产调控的工作提供了科学依据。