Woodcock Corinne L, Alsaleem Mansour, Toss Michael S, Lothion-Roy Jennifer, Harris Anna E, Jeyapalan Jennie N, Blatt Nataliya, Rizvanov Albert A, Miftakhova Regina R, Kariri Yousif A, Madhusudan Srinivasan, Green Andrew R, Rutland Catrin S, Fray Rupert G, Rakha Emad A, Mongan Nigel P
University of Nottingham Biodiscovery Institute, University of Nottingham, Nottingham, UK.
Faculty of Medicine and Health Science, School of Veterinary Medicine and Science, University of Nottingham, Nottingham, UK.
Discov Oncol. 2024 Aug 11;15(1):343. doi: 10.1007/s12672-024-01205-8.
BACKGROUND: N6-methyladenosine (mA) is the most common internal RNA modification and is involved in regulation of RNA and protein expression. AlkB family member 5 (ALKBH5) is a mA demethylase. Given the important role of mA in biological mechanisms, mA and its regulators, have been implicated in many disease processes, including cancer. However, the contribution of ALKBH5 to invasive breast cancer (BC) remains poorly understood. The aim of this study was to evaluate the clinicopathological value of ALKBH5 in BC. METHODS: Publicly available data were used to investigate ALKBH5 mRNA alterations, prognostic significance, and association with clinical parameters at the genomic and transcriptomic level. Differentially expressed genes (DEGs) and enriched pathways with low or high ALKBH5 expression were investigated. Immunohistochemistry (IHC) was used to assess ALKBH5 protein expression in a large well-characterised BC series (n = 1327) to determine the clinical significance and association of ALKBH5 expression. RESULTS: Reduced ALKBH5 mRNA expression was significantly associated with poor prognosis and unfavourable clinical parameters. ALKBH5 gene harboured few mutations and/or copy number alternations, but low ALKBH5 mRNA expression was seen. Patients with low ALKBH5 mRNA expression had a number of differentially expressed genes and enriched pathways, including the cytokine-cytokine receptor interaction pathway. Low ALKBH5 protein expression was significantly associated with unfavourable clinical parameters associated with tumour progression including larger tumour size and worse Nottingham Prognostic Index group. CONCLUSION: This study implicates ALKBH5 in BC and highlights the need for further functional studies to decipher the role of ALKBH5 and RNA mA methylation in BC progression.
背景:N6-甲基腺苷(mA)是最常见的RNA内部修饰,参与RNA和蛋白质表达的调控。AlkB家族成员5(ALKBH5)是一种mA去甲基化酶。鉴于mA在生物学机制中的重要作用,mA及其调节因子已被认为与包括癌症在内的许多疾病过程有关。然而,ALKBH5在浸润性乳腺癌(BC)中的作用仍知之甚少。本研究的目的是评估ALKBH5在BC中的临床病理价值。 方法:利用公开数据在基因组和转录组水平研究ALKBH5 mRNA的改变、预后意义及其与临床参数的关联。研究了ALKBH5表达低或高时的差异表达基因(DEG)和富集通路。采用免疫组织化学(IHC)方法评估1327例特征明确的BC大样本系列中ALKBH5蛋白的表达,以确定ALKBH5表达的临床意义及相关性。 结果:ALKBH5 mRNA表达降低与预后不良和不利的临床参数显著相关。ALKBH5基因存在少量突变和/或拷贝数改变,但可见ALKBH5 mRNA低表达。ALKBH5 mRNA表达低的患者有许多差异表达基因和富集通路,包括细胞因子-细胞因子受体相互作用通路。ALKBH5蛋白低表达与包括肿瘤体积较大和诺丁汉预后指数分组较差等与肿瘤进展相关的不利临床参数显著相关。 结论:本研究表明ALKBH5与BC有关,并强调需要进一步开展功能研究以阐明ALKBH5和RNA mA甲基化在BC进展中的作用。
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