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基于浊度降低直接筛选培养基中的PET水解酶活性

Direct Screening of PET Hydrolase Activity in Culture Medium Based on Turbidity Reduction.

作者信息

Ogura Yui, Hashino Yoshihito, Nakamura Akihiko

机构信息

Department of Agriculture, Graduate School of Integrated Science and Technology, Shizuoka University, 836 Ohya, Suruga-ku, Shizuoka 422-8529, Japan.

Department of Applied Life Sciences, Faculty of Agriculture, Shizuoka University, 836 Ohya, Suruga-ku, Shizuoka 422-8529, Japan.

出版信息

ACS Omega. 2024 Jul 26;9(31):34151-34160. doi: 10.1021/acsomega.4c05488. eCollection 2024 Aug 6.

Abstract

The development of an efficient screening method for the activity of PET-degrading enzymes represents a significant technological advance in the field of enzyme research, with the potential to facilitate the advancement of enzymes for PET recycling. By examining the stable conditions of PET suspension and enzyme production conditions, we developed a method to quantify PET-degrading enzyme activity in culture medium using turbidity reduction as an indicator. High PET concentration or ionic strength caused aggregation of PET, and the best condition for activity detection was 0.5 mg mL PET in 50 mM sodium phosphate pH 7.0. Preculture of increased the purity of enzyme secreted in medium. To evaluate the screening method, 720 colonies of the PET2-7M-H229X-F233X mutant library were analyzed and three candidates of high-activity mutants were obtained. The thermostability of the mutants could also be easily measured by measuring the residual activity after heat treatment. The H229T-F233M mutant showed 3.4 times higher degradation rate against PET film than the template enzyme at the initial time. The molecular dynamics simulation implied that the F233M mutation makes space for making an α helix and that the H229T mutation resolved the steric hindrance with Trp199. These mutations were speculated to change the angle of the Trp199 side chain of PET2 to an angle similar to that of the Trp185 of IsPETase, making it suitable for PET binding to the active center. Screening of activity using PET suspensions is compatible with robotic automation and is expected to be useful for validating computationally predicted mutations.

摘要

开发一种高效的PET降解酶活性筛选方法是酶研究领域一项重大的技术进步,具有推动用于PET回收的酶发展的潜力。通过研究PET悬浮液的稳定条件和酶的生产条件,我们开发了一种以吸光度降低为指标来量化培养基中PET降解酶活性的方法。高PET浓度或离子强度会导致PET聚集,活性检测的最佳条件是在50 mM磷酸钠(pH 7.0)中加入0.5 mg/mL PET。预培养提高了培养基中分泌的酶的纯度。为了评估该筛选方法,对PET2-7M-H229X-F233X突变体文库的720个菌落进行了分析,获得了三个高活性突变体候选株。通过测量热处理后的残余活性,也可以轻松测定突变体的热稳定性。在初始阶段,H229T-F233M突变体对PET薄膜的降解率比模板酶高3.4倍。分子动力学模拟表明,F233M突变形成了一个α螺旋的空间,H229T突变消除了与Trp199的空间位阻。推测这些突变将PET2的Trp199侧链的角度改变为与IsPETase的Trp185相似的角度,使其适合PET与活性中心结合。使用PET悬浮液进行活性筛选与机器人自动化兼容,有望用于验证计算预测的突变。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/990b/11307985/eb07ac0c717b/ao4c05488_0001.jpg

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