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斑头雁粪便样本中多种新型微小核糖核酸病毒的鉴定与特征分析

Identification and characterization of multiple novel picornaviruses in fecal samples of bar-headed goose.

作者信息

Sun Yijie, Wang Yan, Ji Li, Zhao Qifan, Shen Quan, Wang Xiaochun, Liu Yuwei, Ji Likai, Yang Shixing, Zhang Wen

机构信息

School of Medicine, Jiangsu University, Zhenjiang, Jiangsu, China.

出版信息

Front Microbiol. 2024 Jul 26;15:1440801. doi: 10.3389/fmicb.2024.1440801. eCollection 2024.

Abstract

INTRODUCTION

The bar-headed goose (), one of the most well-known high-altitude birds, is renowned for its adaptation to high-altitude environments. Previous studies have shown that they can be infected with highly pathogenic avian influenza; however, there is currently limited research on other viruses in bar-headed geese.

METHODS

In this study, 10 fecal samples of healthy bar-headed geese were collected, and viral metagenomics method was conducted to identify novel picornaviruses.

RESULTS

Seven novel picornaviruses were identified in the fecal samples of bar-headed geese. Most of these picornaviruses were genetically different from other currently known viruses in the NCBI dataset. Among them, PICV4 was determined to be a new species belonging to the genus, PICV5 and PICV13 were classified as novel species belonging to the genus, and the remaining four picornaviruses (PICV1, PICV19, PICV21, and PICV22) were identified as part of the Megrivirus A species of the genus. Recombinant analysis indicates that PICV21 was a potential recombinant, and the major and minor parents were PICV1 and PICV22, respectively.

CONCLUSION

The findings of this study increase our understanding of the diversity of picornaviruses in bar-headed geese and provide practical viral genome information for the prevention and treatment of potential viral diseases affecting this species.

摘要

引言

斑头雁()是最著名的高海拔鸟类之一,以其对高海拔环境的适应性而闻名。先前的研究表明它们可能感染高致病性禽流感;然而,目前关于斑头雁中其他病毒的研究有限。

方法

在本研究中,收集了10份健康斑头雁的粪便样本,并采用病毒宏基因组学方法鉴定新型微小核糖核酸病毒。

结果

在斑头雁粪便样本中鉴定出7种新型微小核糖核酸病毒。这些微小核糖核酸病毒中的大多数在基因上与NCBI数据集中目前已知的其他病毒不同。其中,PICV4被确定为属于 属的一个新种,PICV5和PICV13被归类为属于 属的新种,其余四种微小核糖核酸病毒(PICV1、PICV19、PICV21和PICV22)被鉴定为 属的Megrivirus A种的一部分。重组分析表明PICV21是一种潜在的重组体,主要亲本和次要亲本分别是PICV1和PICV22。

结论

本研究结果增进了我们对斑头雁中微小核糖核酸病毒多样性的了解,并为预防和治疗影响该物种的潜在病毒性疾病提供了实用的病毒基因组信息。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a719/11310119/099e41bc49e1/fmicb-15-1440801-g001.jpg

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