从墨西哥一个油藏中分离出的产鼠李糖脂细菌菌株CM-CNRG TB177的基因组序列草图
Draft genome sequence of rhamnolipid-producing bacteria strain CM-CNRG TB177 isolated from an oil reservoir in Mexico.
作者信息
Segovia Veronica, Martínez Pedro, Hernández-Gama Regina
机构信息
Unidad Profesional Interdisciplinaria de Ingeniería Campus Zacatecas, Instituto Politécnico Nacional, Zacatecas, Zacatecas, Mexico.
Centro de Investigación en Ciencia Aplicada y Tecnología Avanzada Campus Querétaro, Instituto Politécnico Nacional, Querétaro, Querétaro, Mexico.
出版信息
Microbiol Resour Announc. 2024 Sep 10;13(9):e0043424. doi: 10.1128/mra.00434-24. Epub 2024 Aug 20.
Abstract
The draft genome of CM-CNRG TB177 isolated from an oil reservoir in Mexico was determined and annotated. The organism is a thermophilic and strict anaerobe bacterium that produces rhamnolipids, using glucose as a carbon source. The predicted genome size is 2,496,169 bp and 2,550 genes.
摘要
测定并注释了从墨西哥一个油藏中分离出的CM-CNRG TB177的基因组草图。该生物体是一种嗜热严格厌氧菌，以葡萄糖作为碳源生产鼠李糖脂。预测的基因组大小为2,496,169碱基对，含有2,550个基因。
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本文引用的文献
1
Structure and function of extreme TLS DNA polymerase TTEDbh from Thermoanaerobacter tengcongensis.
Int J Biol Macromol. 2023 Dec 31;253(Pt 2):126770. doi: 10.1016/j.ijbiomac.2023.126770. Epub 2023 Sep 6.
2
Formate-driven H production by whole cells of Thermoanaerobacter kivui.
Biotechnol Biofuels Bioprod. 2022 May 11;15(1):48. doi: 10.1186/s13068-022-02147-5.
3
Production of rhamnolipids by the Thermoanaerobacter sp. CM-CNRG TB177 strain isolated from an oil well in Mexico.
Appl Microbiol Biotechnol. 2021 Aug;105(14-15):5833-5844. doi: 10.1007/s00253-021-11468-8. Epub 2021 Aug 16.
4
Secondary Alcohol Dehydrogenases from Thermoanaerobacter pseudoethanolicus and Thermoanaerobacter brockii as Robust Catalysts.
Chembiochem. 2021 Jun 2;22(11):1884-1893. doi: 10.1002/cbic.202100043. Epub 2021 Apr 8.
5
GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database.
Bioinformatics. 2019 Nov 15;36(6):1925-7. doi: 10.1093/bioinformatics/btz848.
6
NCBI prokaryotic genome annotation pipeline.
Nucleic Acids Res. 2016 Aug 19;44(14):6614-24. doi: 10.1093/nar/gkw569. Epub 2016 Jun 24.
7
Trimmomatic: a flexible trimmer for Illumina sequence data.
Bioinformatics. 2014 Aug 1;30(15):2114-20. doi: 10.1093/bioinformatics/btu170. Epub 2014 Apr 1.
8
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.
J Comput Biol. 2012 May;19(5):455-77. doi: 10.1089/cmb.2012.0021. Epub 2012 Apr 16.
9
Characterization of the central metabolic pathways in Thermoanaerobacter sp. strain X514 via isotopomer-assisted metabolite analysis.
Appl Environ Microbiol. 2009 Aug;75(15):5001-8. doi: 10.1128/AEM.00715-09. Epub 2009 Jun 12.
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