Murray Laura, Fullerton Heather, Moyer Craig L
Department of Biology, Western Washington University, Bellingham, WA, United States.
Department of Biology, College of Charleston, Charleston, SC, United States.
Front Microbiol. 2024 Aug 6;15:1399422. doi: 10.3389/fmicb.2024.1399422. eCollection 2024.
Hydrothermal vents host a diverse community of microorganisms that utilize chemical gradients from the venting fluid for their metabolisms. The venting fluid can solidify to form chimney structures that these microbes adhere to and colonize. These chimney structures are found throughout many different locations in the world's oceans. In this study, comparative metagenomic analyses of microbial communities on five chimney structures from around the Pacific Ocean were elucidated focusing on the core taxa and genes that are characteristic of each of these hydrothermal vent chimneys. The differences among the taxa and genes found at each chimney due to parameters such as physical characteristics, chemistry, and activity of the vents were highlighted. DNA from the chimneys was sequenced, assembled into contigs, and annotated for gene function. Genes used for carbon, oxygen, sulfur, nitrogen, iron, and arsenic metabolisms were found at varying abundances at each of the chimneys, largely from either Gammaproteobacteria or Campylobacteria. Many taxa shared an overlap of these functional metabolic genes, indicating that functional redundancy is critical for life at these hydrothermal vents. A high relative abundance of oxygen metabolism genes coupled with a low abundance of carbon fixation genes could be used as a unique identifier for inactive chimneys. Genes used for DNA repair, chemotaxis, and transposases were found at high abundances at each of these hydrothermal chimneys allowing for enhanced adaptations to the ever-changing chemical and physical conditions encountered.
热液喷口存在着各种各样的微生物群落,这些微生物利用喷口流体中的化学梯度进行新陈代谢。喷口流体可以凝固形成烟囱结构,这些微生物附着在上面并进行定殖。这些烟囱结构在世界各大洋的许多不同地点都有发现。在这项研究中,对来自太平洋周围五个烟囱结构上的微生物群落进行了比较宏基因组分析,重点关注这些热液喷口烟囱各自特有的核心分类群和基因。突出了由于喷口的物理特征、化学性质和活动等参数,每个烟囱处发现的分类群和基因之间的差异。对烟囱中的DNA进行测序,组装成重叠群,并对基因功能进行注释。在每个烟囱中,用于碳、氧、硫、氮、铁和砷代谢的基因丰度各不相同,主要来自γ-变形菌或弯曲杆菌。许多分类群共享这些功能性代谢基因的重叠部分,这表明功能冗余对于这些热液喷口的生命至关重要。高相对丰度的氧代谢基因与低丰度的碳固定基因相结合,可以用作非活动烟囱的独特标识符。在这些热液烟囱的每一个中都发现了用于DNA修复、趋化作用和转座酶的基因,这使得它们能够更好地适应所遇到的不断变化的化学和物理条件。