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中国大陆首例人类败血症相关的ST25菌株的鉴定及基因组分析。

Identification and genomic analyses of a ST25 strain associated with the first human septicemia in mainland China.

作者信息

Cao Peipei, Lin Meixing, Chen Zhiling, Zhang Guannan, Lai Xin-He, Wu Xiang, Niu Lina

机构信息

Key Laboratory of Tropical Translational Medicine of Ministry of Education, Hainan Medical University, Haikou, Hainan, China.

Hainan Medical University-The University of Hong Kong Joint Laboratory of Tropical Infectious Diseases, Hainan Medical University, Haikou, Hainan, China.

出版信息

Heliyon. 2024 Aug 2;10(15):e35456. doi: 10.1016/j.heliyon.2024.e35456. eCollection 2024 Aug 15.

Abstract

() is a Gram-positive bacterium and the main culprit behind zoonotic outbreaks, posing a serious threat to public health. The prevalent strains in China are mainly of sequence types (ST) 1 and 7, with few cases of human infections caused by other sequence type being reported. This study presents the first isolation of a ST25 strain from the blood of a septicemic patient. A 57-year-old febrile patient was admitted to a hospital in Hainan of China, diagnosed as septicemia and hepatic dysfunction. A strain of was isolated from blood culture and confirmed to be serotype 2 and ST25 through 16S rRNA sequencing and whole-genome sequencing, and its genome was further analyzed for gene functions and presence of drug resistance genes. The full-length genome of strain HN28 spans 2,280,124 bp and encodes a total of 2291 proteins. Genes annotated in COG, GO, KEGG, CAZy, and PHl databases accounted for 75.38 %, 69.14 %, 55.35 %, 4.58 %, and 11.87 % of the total predicted proteins, respectively. Virulence factor analysis revealed the presence of seven putative virulence genes in strain HN28. Analysis using the CARD database identified 51 resistance genes in HN28, alongside abundant exocytosis systems. These findings underscore the occurrence of infections in humans caused by less common ST, emphasizing the need for enhanced epidemiological investigations and monitoring of infections in the human population.

摘要

()是一种革兰氏阳性菌,是人畜共患病爆发的主要元凶,对公众健康构成严重威胁。中国流行的菌株主要是序列类型(ST)1和7,由其他序列类型引起的人类感染病例报道较少。本研究首次从一名败血症患者的血液中分离出ST25菌株。一名57岁发热患者入住中国海南一家医院,被诊断为败血症和肝功能障碍。从血培养中分离出一株(),通过16S rRNA测序和全基因组测序确认为血清型2和ST25,并对其基因组进行了基因功能和耐药基因存在情况的进一步分析。菌株HN28的全长基因组跨度为2,280,124 bp,共编码2291种蛋白质。在COG、GO、KEGG、CAZy和PHl数据库中注释的基因分别占预测总蛋白的75.38%、69.14%、55.35%、4.58%和11.87%。毒力因子分析显示菌株HN28中存在7个假定的毒力基因。使用CARD数据库分析在HN28中鉴定出51个耐药基因,同时还有丰富的胞吐系统。这些发现强调了由不太常见的ST引起的人类()感染的发生,强调需要加强对人群中()感染的流行病学调查和监测。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/30ee/11336695/45e8815e4702/gr1.jpg

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