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在泰国暴发的由新出现的人畜共患病株引起的、具有获得性多重耐药性的疫情。

outbreak caused by an emerging zoonotic strain with acquired multi-drug resistance in Thailand.

机构信息

Amsterdam UMC location University of Amsterdam, Department of Global Health, Amsterdam Institute for Global Health and Development, Paasheuvelweg 25, Amsterdam, The Netherlands.

Amsterdam UMC location University of Amsterdam, Department of Medical Microbiology and Infection Prevention, Meibergdreef 9, Amsterdam, The Netherlands.

出版信息

Microb Genom. 2023 Feb;9(2). doi: 10.1099/mgen.0.000952.

Abstract

is an emerging zoonotic swine pathogen which can cause severe infections in humans. In March 2021, an outbreak of infections with 19 confirmed cases of septicemia and meningitis leading to two deaths, occurred in Nakhon Ratchasima province, Thailand. We characterized the outbreak through an epidemiological investigation combined with Illumina and Nanopore whole genome sequencing (WGS). The source of the outbreak was traced back to a raw pork dish prepared from a single pig during a Buddhist ceremony attended by 241 people. WGS analysis revealed that a single serotype 2 strain belonging to a novel sequence type (ST) of the emergent Thai zoonotic clade CC233/379, was responsible for the infections. The outbreak clone grouped together with other Thai zoonotic strains from CC233/379 and CC104 in a global phylogeny and capsule switching events between serotype 2 zoonotic strains and serotype 7 porcine strains were identified. The outbreak strain showed reduced susceptibility to penicillin corresponding with mutations in key residues in the penicillin binding proteins (PBPs). Furthermore, the outbreak strain was resistant to tetracycline, erythromycin, clindamycin, linezolid and chloramphenicol, having acquired an integrative and conjugative element (ICE) carrying resistance genes and as well as a transposon from the IS1216 family carrying and . This investigation demonstrates that multi-drug resistant zoonotic lineages of which pose a threat to human health continue to emerge.

摘要

是一种新兴的人畜共患病猪病原体,可导致人类严重感染。2021 年 3 月,在泰国那空叻差是玛府发生了一起感染事件,共有 19 例败血症和脑膜炎确诊病例,导致 2 人死亡。我们通过结合 Illumina 和 Nanopore 全基因组测序(WGS)的流行病学调查对此次暴发进行了特征描述。暴发的源头可追溯到一场佛教仪式上的一道生猪肉菜,该仪式有 241 人参加,这道菜是用一头猪准备的。WGS 分析显示,引起此次感染的单一血清型 2 菌株属于新兴泰国人畜共患病群 CC233/379 的新型序列型(ST)。暴发克隆与来自 CC233/379 和 CC104 的其他泰国人畜共患病株一起聚集在全球系统发育树中,并确定了血清型 2 人畜共患病株和血清型 7 猪株之间的荚膜转换事件。该暴发菌株对青霉素的敏感性降低,这与青霉素结合蛋白(PBPs)中的关键残基的突变有关。此外,该暴发菌株对青霉素、四环素、红霉素、克林霉素、利奈唑胺和氯霉素耐药,获得了一个携带 和 耐药基因的整合和共轭元件(ICE),以及一个来自携带 和 的 IS1216 家族的转座子。该调查表明,对人类健康构成威胁的 人畜共患病多药耐药谱系不断出现。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6635/9997742/87e59ee812e9/mgen-9-952-g001.jpg

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