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越南金花茶(Pitard)西利的完整叶绿体基因组。

The complete chloroplast genome of (Pitard) Sealy, a golden camellia of Vietnam.

作者信息

Tang Yunxia, Zhou Xingwen, Zhu Mengyao, He BingBing, Jiang Changjie, Ding Guochang

机构信息

College of Landscape Architecture and Art, Fujian Agriculture and Forestry University, Fuzhou, China.

College of Architecture and Planning, Fujian University of Technology.

出版信息

Mitochondrial DNA B Resour. 2024 Aug 21;9(8):1117-1121. doi: 10.1080/23802359.2024.2392741. eCollection 2024.

DOI:10.1080/23802359.2024.2392741
PMID:39175482
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11340231/
Abstract

(Pit.) Sealy 1949 is a rare and precious species with golden flowers, which hold important ornamental and breeding values. In this study, the complete chloroplast genome of is reported for the first time. The chloroplast genome exhibits a typical quadripartite structure with a total length of 156,670 bp and a GC content of 37.32%, including a large single-copy region (86,250 bp), a small single-copy region (18,292 bp), and a pair of inverted repeat regions (26,064 bp). A total of 133 genes, including 88 protein-coding genes, 37 tRNA genes, and 8 rRNA genes were annotated. The phylogenetic analysis revealed a close relationship between and . The chloroplast genome sequence of serves as a valuable resource for further breeding research and genetic phylogenetic studies.

摘要

(海桐属)西利海桐1949是一种珍稀物种,花朵金黄,具有重要的观赏和育种价值。本研究首次报道了其完整的叶绿体基因组。叶绿体基因组呈现典型的四分体结构,全长156,670 bp,GC含量为37.32%,包括一个大单拷贝区域(86,250 bp)、一个小单拷贝区域(18,292 bp)和一对反向重复区域(26,064 bp)。共注释了133个基因,包括88个蛋白质编码基因、37个tRNA基因和8个rRNA基因。系统发育分析表明该物种与另一物种关系密切。西利海桐1949的叶绿体基因组序列为进一步的育种研究和遗传系统发育研究提供了宝贵资源。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4a9b/11340231/225ce9a7e97c/TMDN_A_2392741_F0003_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4a9b/11340231/8fb0a69f09da/TMDN_A_2392741_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4a9b/11340231/97f224c967ef/TMDN_A_2392741_F0002_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4a9b/11340231/225ce9a7e97c/TMDN_A_2392741_F0003_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4a9b/11340231/8fb0a69f09da/TMDN_A_2392741_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4a9b/11340231/97f224c967ef/TMDN_A_2392741_F0002_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4a9b/11340231/225ce9a7e97c/TMDN_A_2392741_F0003_B.jpg

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本文引用的文献

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Complete chloroplast genome sequence of Camellia sinensis: genome structure, adaptive evolution, and phylogenetic relationships.茶树完整叶绿体基因组序列:基因组结构、适应性进化和系统发育关系。
J Appl Genet. 2023 Sep;64(3):419-429. doi: 10.1007/s13353-023-00767-7. Epub 2023 Jun 28.
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CPGView: A package for visualizing detailed chloroplast genome structures.CPGView:一个用于可视化详细叶绿体基因组结构的软件包。
Mol Ecol Resour. 2023 Apr;23(3):694-704. doi: 10.1111/1755-0998.13729. Epub 2023 Jan 1.
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The complete chloroplast genome sequence of rare and endangered Y. Wan & S. Z. Huang (Theaceae) of South China.
中国南方珍稀濒危植物圆籽荷(山茶科)的完整叶绿体基因组序列。(注:原文中“Y. Wan & S. Z. Huang”可能有误,圆籽荷的学名是Apterosperma oblata)
Mitochondrial DNA B Resour. 2021 Sep 13;6(10):2893-2895. doi: 10.1080/23802359.2021.1915207. eCollection 2021.
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The complete chloroplast genomes of and .和的完整叶绿体基因组。
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GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes.GetOrganelle:一个快速且通用的工具包,可用于准确从头组装细胞器基因组。
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