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通过机器学习算法和单细胞测序分析揭示STEAP4靶向MIF对过敏性哮喘气道上皮细胞炎症的调控作用。

Revealing the regulation of allergic asthma airway epithelial cell inflammation by STEAP4 targeting MIF through machine learning algorithms and single-cell sequencing analysis.

作者信息

Qiao Lu, Li Shi-Meng, Liu Jun-Nian, Duan Hong-Lei, Jiang Xiao-Feng

机构信息

Department of Clinical Laboratory, The Fourth Affiliated Hospital of Harbin Medical University, Harbin, Heilongjiang, China.

Department of Clinical Laboratory, China-Japan Union Hospital of Jilin University, Changchun, Jilin, China.

出版信息

Front Mol Biosci. 2024 Aug 8;11:1427352. doi: 10.3389/fmolb.2024.1427352. eCollection 2024.

Abstract

Asthma comprises one of the most common chronic inflammatory conditions, yet still lacks effective diagnostic markers and treatment targets. To gain deeper insights, we comprehensively analyzed microarray datasets of airway epithelial samples from asthmatic patients and healthy subjects in the Gene Expression Omnibus database using three machine learning algorithms. Our investigation identified a pivotal gene, . The expression of in patients with allergic asthma was found to be reduced. Furthermore, it was found to negatively correlate with the severity of the disease and was subsequently validated in asthmatic mice in this study. A ROC analysis of showed the AUC value was greater than 0.75. Functional enrichment analysis of indicated a strong correlation with IL-17, steroid hormone biosynthesis, and ferroptosis signaling pathways. Subsequently, intercellular communication analysis was performed using single-cell RNA sequencing data obtained from airway epithelial cells. The results revealed that samples exhibiting low levels of expression had a richer signaling pathway in comparison to samples with high expression. Through both and experiments, we further confirmed the overexpression of STEAP4 in airway epithelial cells resulted in decreased expression of MIF, which in turn caused a decrease in the levels of the cytokines IL-33, IL-25, and IL-4; In contrast, when the STEAP4 was suppressed in airway epithelial cells, there was an upregulation of MIF expression, resulting in elevated levels of the cytokines IL-33, IL-25, and IL-4. These findings suggest that STEAP4 in the airway epithelium reduces allergic asthma Th2-type inflammatory reactions by inhibiting the MIF signaling pathway.

摘要

哮喘是最常见的慢性炎症性疾病之一,但仍缺乏有效的诊断标志物和治疗靶点。为了深入了解,我们使用三种机器学习算法,对基因表达综合数据库中哮喘患者和健康受试者气道上皮样本的微阵列数据集进行了全面分析。我们的研究确定了一个关键基因,。发现该基因在过敏性哮喘患者中的表达降低。此外,发现它与疾病严重程度呈负相关,并在本研究中的哮喘小鼠中得到验证。对该基因的ROC分析显示AUC值大于0.75。对该基因的功能富集分析表明,它与IL-17、类固醇激素生物合成和铁死亡信号通路密切相关。随后,使用从气道上皮细胞获得的单细胞RNA测序数据进行细胞间通讯分析。结果显示,与高表达样本相比,低表达样本具有更丰富的信号通路。通过实验和实验,我们进一步证实,气道上皮细胞中STEAP4的过表达导致MIF表达降低,进而导致细胞因子IL-33、IL-25和IL-4水平降低;相反,当气道上皮细胞中STEAP4被抑制时,MIF表达上调,导致细胞因子IL-33、IL-25和IL-4水平升高。这些发现表明,气道上皮中的STEAP4通过抑制MIF信号通路减轻过敏性哮喘的Th2型炎症反应。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1ae8/11338762/a625e1aa98cd/fmolb-11-1427352-g001.jpg

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