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毛翅目(昆虫纲:蜉蝣目)中的视蛋白基因的进化。

Evolution of Opsin Genes in Caddisflies (Insecta: Trichoptera).

机构信息

Department of Plant and Wildlife Sciences, Brigham Young University, Provo, UT, USA.

LOEWE Centre for Translational Biodiversity Genomics, Frankfurt, Germany.

出版信息

Genome Biol Evol. 2024 Sep 3;16(9). doi: 10.1093/gbe/evae185.

DOI:10.1093/gbe/evae185
PMID:39176990
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11381090/
Abstract

Insects have evolved complex and diverse visual systems in which light-sensing protein molecules called "opsins" couple with a chromophore to form photopigments. Insect photopigments group into three major gene families based on wavelength sensitivity: long wavelength (LW), short wavelength (SW), and ultraviolet wavelength (UV). In this study, we identified 123 opsin sequences from whole-genome assemblies across 25 caddisfly species (Insecta: Trichoptera). We discovered the LW opsins have the most diversity across species and form two separate clades in the opsin gene tree. Conversely, we observed a loss of the SW opsin in half of the trichopteran species in this study, which might be associated with the fact that caddisflies are active during low-light conditions. Lastly, we found a single copy of the UV opsin in all the species in this study, with one exception: Athripsodes cinereus has two copies of the UV opsin and resides within a clade of caddisflies with colorful wing patterns.

摘要

昆虫已经进化出复杂多样的视觉系统,其中称为“视蛋白”的光感蛋白分子与发色团结合形成光色素。昆虫光色素根据波长敏感性分为三大基因家族:长波(LW)、短波(SW)和紫外线(UV)。在这项研究中,我们从 25 种石蛾物种(昆虫纲:蜉蝣目)的全基因组组装中鉴定出 123 个视蛋白序列。我们发现 LW 视蛋白在物种间具有最多的多样性,并在视蛋白基因树中形成两个独立的分支。相反,我们观察到在本研究的一半蜉蝣目中失去了 SW 视蛋白,这可能与石蛾在低光条件下活跃有关。最后,我们在本研究中的所有物种中都发现了一个 UV 视蛋白的副本,只有一个例外:Athripsodes cinereus 有两个 UV 视蛋白副本,并且位于具有彩色翅膀图案的石蛾类群中。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a441/11381090/3e07d802975c/evae185f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a441/11381090/249a11b51b44/evae185f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a441/11381090/9c192eeaed8d/evae185f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a441/11381090/3e07d802975c/evae185f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a441/11381090/249a11b51b44/evae185f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a441/11381090/9c192eeaed8d/evae185f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a441/11381090/3e07d802975c/evae185f3.jpg

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本文引用的文献

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Phylogenomics recovers multiple origins of portable case making in caddisflies (Insecta: Trichoptera), nature's underwater architects.系统发生基因组学揭示了水生建筑师——石蛾目昆虫(昆虫纲:毛翅目)中可移动鞘翅的多个起源。
Proc Biol Sci. 2024 Jul;291(2026):20240514. doi: 10.1098/rspb.2024.0514. Epub 2024 Jul 3.
2
Opsin Gene Duplication in Lepidoptera: Retrotransposition, Sex Linkage, and Gene Expression.飞蛾类视蛋白基因复制:反转录转座、性连锁和基因表达。
Mol Biol Evol. 2023 Nov 3;40(11). doi: 10.1093/molbev/msad241.
3
Parallel Losses of Blue Opsin Correlate with Compensatory Neofunctionalization of UV-Opsin Gene Duplicates in Aphids and Planthoppers.
蓝色视蛋白的平行丧失与蚜虫和飞虱中紫外线视蛋白基因重复的补偿性新功能化相关。
Insects. 2023 Sep 20;14(9):774. doi: 10.3390/insects14090774.
4
Characterization of the primary structure of the major silk gene, , across caddisfly (Trichoptera) suborders.毛翅目(Trichoptera)各亚目主要丝基因的一级结构特征
iScience. 2023 Jul 4;26(8):107253. doi: 10.1016/j.isci.2023.107253. eCollection 2023 Aug 18.
5
Allelic resolution of insect and spider silk genes reveals hidden genetic diversity.等位基因解析昆虫和蜘蛛丝基因揭示隐藏的遗传多样性。
Proc Natl Acad Sci U S A. 2023 May 2;120(18):e2221528120. doi: 10.1073/pnas.2221528120. Epub 2023 Apr 24.
6
Long-read HiFi sequencing correctly assembles repetitive silk genes in new moth and caddisfly genomes.长读长HiFi测序可在新的蛾类和石蛾基因组中正确组装重复的丝蛋白基因。
GigaByte. 2022 Jun 30;2022:gigabyte64. doi: 10.46471/gigabyte.64. eCollection 2022.
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Jewel Beetle Opsin Duplication and Divergence Is the Mechanism for Diverse Spectral Sensitivities.宝石甲虫视蛋白复制和分歧是产生多样化光谱敏感性的机制。
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