State Key Laboratory of Materials-Oriented Chemical Engineering, School of Pharmaceutical Sciences, Nanjing Tech university, Nanjing 210009, Jiangsu Province, People's Republic of China.
Institute of Biotechnology, RWTH Aachen University, Worringerweg 3, 52074 Aachen, Germany.
Int J Biol Macromol. 2024 Oct;278(Pt 4):134953. doi: 10.1016/j.ijbiomac.2024.134953. Epub 2024 Aug 23.
The improvement of enzyme thermostability often accompanies the decreased activity due to the loss of the key regions' flexibility. As a representative structure, unlocking the potential of loop dynamics will not only provide new ideas for stabilization strategies, but also help to deepen the understanding of the relationship between enzyme structural dynamics and function. In this study, a creative "hook loop dynamics engineering" (HLoD) strategy was successfully proposed for simultaneously improving the thermostability and maintaining activity of the model enzyme, Candida Antarctica lipase B. A small and smart mutant library involving five key residues located at the "hook loop" was meticulously identified and systematically investigated and thus yielded a five-point multiple mutant M1 (L147S/T244P/S250P/T256D/N292D), demonstrating a remarkable 7.0-fold increase in thermostability at 60 °C compared to the wild-type (WT). Furthermore, the activity of M1 remained comparable to that of WT, effectively transcending the barrier of activity-stability trade-off. Molecular dynamics simulations revealed that the precise regulation of hook loop dynamics via intermolecular interactions, such as salt bridges and hydrogen bonding, curbed the excessive flexibility of the pivotal regions α5 and α10 at high temperatures, thus driving the substantial enhancement of the thermostability of M1. Refining the dynamics of the flexible region via HLoD, which transcended the barrier of activity-stability trade-off, exhibited to be a robust and potentially universal strategy for designing enzymes with outstanding thermostability and activity.
酶热稳定性的提高通常伴随着关键区域柔韧性丧失导致的活性降低。作为一个代表性结构,解锁环动态的潜力不仅为稳定策略提供了新的思路,还有助于深化对酶结构动力学与功能关系的理解。在这项研究中,成功提出了一种创造性的“钩环动力学工程”(HLoD)策略,用于同时提高模型酶南极假丝酵母脂肪酶 B 的热稳定性和保持其活性。精心鉴定并系统研究了涉及五个关键残基位于“钩环”的小型智能突变体文库,从而产生了一个五点多位点突变体 M1(L147S/T244P/S250P/T256D/N292D),与野生型(WT)相比,在 60°C 时热稳定性显著提高了 7.0 倍。此外,M1 的活性仍与 WT 相当,有效地超越了活性-稳定性权衡的障碍。分子动力学模拟表明,通过分子间相互作用(如盐桥和氢键)精确调节钩环动力学,限制了关键区域α5和α10在高温下的过度灵活性,从而驱动 M1 的热稳定性显著提高。通过 HLoD 精细调节柔性区域的动力学,超越了活性-稳定性权衡的障碍,这被证明是设计具有出色热稳定性和活性的酶的一种强大且具有普遍适用性的策略。