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清醒小鼠嗅球中密集且持久的气味表征。

Dense and Persistent Odor Representations in the Olfactory Bulb of Awake Mice.

机构信息

Department of Electrical and Computer Engineering, Rice University, Houston, Texas 97030.

Department of Neuroscience, Baylor College of Medicine, Houston, Texas 97030.

出版信息

J Neurosci. 2024 Sep 25;44(39):e0116242024. doi: 10.1523/JNEUROSCI.0116-24.2024.

Abstract

Recording and analysis of neural activity are often biased toward detecting sparse subsets of highly active neurons, masking important signals carried in low-magnitude and variable responses. To investigate the contribution of seemingly noisy activity to odor encoding, we used mesoscale calcium imaging from mice of both sexes to record odor responses from the dorsal surface of bilateral olfactory bulbs (OBs). The outer layer of the mouse OB is comprised of dendrites organized into discrete "glomeruli," which are defined by odor receptor-specific sensory neuron input. We extracted activity from a large population of glomeruli and used logistic regression to classify odors from individual trials with high accuracy. We then used add-in and dropout analyses to determine subsets of glomeruli necessary and sufficient for odor classification. Classifiers successfully predicted odor identity even after excluding sparse, highly active glomeruli, indicating that odor information is redundantly represented across a large population of glomeruli. Additionally, we found that random forest (RF) feature selection informed by Gini inequality (RF Gini impurity, RFGI) reliably ranked glomeruli by their contribution to overall odor classification. RFGI provided a measure of "feature importance" for each glomerulus that correlated with intuitive features like response magnitude. Finally, in agreement with previous work, we found that odor information persists in glomerular activity after the odor offset. Together, our findings support a model of OB odor coding where sparse activity is sufficient for odor identification, but information is widely, redundantly available across a large population of glomeruli, with each glomerulus representing information about more than one odor.

摘要

神经活动的记录和分析往往偏向于检测高度活跃神经元的稀疏子集,从而掩盖了低幅度和可变反应中携带的重要信号。为了研究看似嘈杂的活动对气味编码的贡献,我们使用雌雄小鼠的中尺度钙成像,从双侧嗅球(OB)的背表面记录气味反应。小鼠 OB 的外层由组织成离散“嗅小球”的树突组成,这些嗅小球由特定气味受体的感觉神经元输入定义。我们从大量嗅小球中提取活动,并使用逻辑回归以高精度从单个试验中分类气味。然后,我们使用加性和缺失分析来确定用于气味分类的必要和充分的嗅小球子集。分类器甚至在排除稀疏、高度活跃的嗅小球后仍成功预测了气味身份,这表明气味信息在大量嗅小球中冗余表示。此外,我们发现基尼不相等(基尼杂质,RFGI)的随机森林(RF)特征选择可靠地按对整体气味分类的贡献对嗅小球进行排序。RFGI 为每个嗅小球提供了一种“特征重要性”的度量,与响应幅度等直观特征相关。最后,与先前的工作一致,我们发现气味信息在气味结束后仍保留在嗅小球活动中。总之,我们的发现支持 OB 气味编码的模型,其中稀疏活动足以识别气味,但信息在大量嗅小球中广泛、冗余地可用,每个嗅小球代表一种以上气味的信息。

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Flexible categorization in the mouse olfactory bulb.小鼠嗅球中的灵活分类。
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SciPy 1.0: fundamental algorithms for scientific computing in Python.SciPy 1.0:Python 中的科学计算基础算法。
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