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剪接体对分支位点的识别。

Branch site recognition by the spliceosome.

机构信息

Department of Structural Biology, Genentech Inc., South San Francisco, California 94080, USA

出版信息

RNA. 2024 Oct 16;30(11):1397-1407. doi: 10.1261/rna.080198.124.

DOI:10.1261/rna.080198.124
PMID:39187383
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11482624/
Abstract

The spliceosome is a eukaryotic multimegadalton RNA-protein complex that removes introns from transcripts. The spliceosome ensures the selection of each exon-intron boundary through multiple recognition events. Initially, the 5' splice site (5' SS) and branch site (BS) are bound by the U1 small nuclear ribonucleoprotein (snRNP) and the U2 snRNP, respectively, while the 3' SS is mostly determined by proximity to the branch site. A large number of splicing factors recognize the splice sites and recruit the snRNPs before the stable binding of the snRNPs occurs by base-pairing the snRNA to the transcript. Fidelity of this process is crucial, as mutations in splicing factors and U2 snRNP components are associated with many diseases. In recent years, major advances have been made in understanding how splice sites are selected in and humans. Here, I review and discuss the current understanding of the recognition of splice sites by the spliceosome with a focus on recognition and binding of the branch site by the U2 snRNP in humans.

摘要

剪接体是一种真核多亚基 RNA-蛋白复合物,可从转录本中切除内含子。剪接体通过多种识别事件确保每个外显子-内含子边界的选择。最初,5'剪接位点(5' SS)和分支位点(BS)分别由 U1 小核核糖核蛋白(snRNP)和 U2 snRNP 结合,而 3' SS 主要由与分支位点的接近程度决定。大量剪接因子识别剪接位点,并在 snRNP 通过与转录本的碱基配对稳定结合之前募集 snRNP。这个过程的保真度至关重要,因为剪接因子和 U2 snRNP 成分的突变与许多疾病有关。近年来,人们在理解剪接体如何选择和人类的剪接位点方面取得了重大进展。在这里,我回顾和讨论了剪接体识别剪接位点的当前理解,重点是人类 U2 snRNP 对分支位点的识别和结合。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/880f/11482624/7269657f321e/1397f02.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/880f/11482624/f10d67c703d6/1397f01.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/880f/11482624/7269657f321e/1397f02.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/880f/11482624/f10d67c703d6/1397f01.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/880f/11482624/7269657f321e/1397f02.jpg

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1
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RNA. 2024 Oct 16;30(11):1397-1407. doi: 10.1261/rna.080198.124.
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本文引用的文献

1
A sequential binding mechanism for 5' splice site recognition and modulation for the human U1 snRNP.一种用于人类 U1 snRNP 的 5' 剪接位点识别和调节的连续结合机制。
Nat Commun. 2024 Oct 10;15(1):8776. doi: 10.1038/s41467-024-53124-5.
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Intron lariat spliceosomes convert lariats to true circles: implications for intron transposition.内含子套索剪接体将套索转化为真正的环:对内含子转座的影响。
Genes Dev. 2024 May 21;38(7-8):322-335. doi: 10.1101/gad.351764.124.
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GPATCH8 modulates mutant SF3B1 mis-splicing and pathogenicity in hematologic malignancies.
GPATCH8 调节血液系统恶性肿瘤中突变 SF3B1 的剪接错误和致病性。
Mol Cell. 2024 May 16;84(10):1886-1903.e10. doi: 10.1016/j.molcel.2024.04.006. Epub 2024 Apr 29.
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Post-transcriptional splicing can occur in a slow-moving zone around the gene.转录后剪接可发生在基因周围的慢移动区。
Elife. 2024 Apr 5;12:RP91357. doi: 10.7554/eLife.91357.
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The splicing regulators RBM5 and RBM10 are subunits of the U2 snRNP engaged with intron branch sites on chromatin.剪接调控因子 RBM5 和 RBM10 是与染色质上内含子分支位点结合的 U2 snRNP 的亚基。
Mol Cell. 2024 Apr 18;84(8):1496-1511.e7. doi: 10.1016/j.molcel.2024.02.039. Epub 2024 Mar 26.
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Distinct functions for the paralogous RBM41 and U11/U12-65K proteins in the minor spliceosome.旁系同源蛋白RBM41和U11/U12-65K在次要剪接体中的不同功能。
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Characterization of the SF3B1-SUGP1 interface reveals how numerous cancer mutations cause mRNA missplicing.鉴定 SF3B1-SUGP1 界面揭示了大量癌症突变如何导致 mRNA 剪接错误。
Genes Dev. 2023 Dec 26;37(21-24):968-983. doi: 10.1101/gad.351154.123.
10
Splicing quality control mediated by DHX15 and its G-patch activator SUGP1.DHX15 和其 G 补丁激活蛋白 SUGP1 介导的剪接质量控制。
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