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冷冻电镜在抗病毒先天免疫研究中的应用。

Cryo-Electron Microscopy in the Study of Antiviral Innate Immunity.

机构信息

School of Medicine, Shaoguan University, Shaoguan, Guangdong, China.

Kobilka Institute of Innovative Drug Discovery, School of Medicine, the Chinese University of Hong Kong, Shenzhen, Guangdong, China.

出版信息

Methods Mol Biol. 2025;2854:177-188. doi: 10.1007/978-1-0716-4108-8_18.

DOI:10.1007/978-1-0716-4108-8_18
PMID:39192129
Abstract

Cryo-electron microscopy is a powerful methodology in structural biology and has been broadly used in high-resolution structure determination for challenging samples, which are not readily available for traditional techniques. In particular, the strength of super macro-complexes and the lack of a need for crystals for cryo-EM make this technique feasible for the structural study of complexes involved in antiviral innate immunity. This chapter presents detailed information and experimental procedures of Cryo-EM for determining the structures of the complexes using STING as an example. The procedures included a sample quality check, high-resolution data acquisition, and image processing for Cryo-EM 3D structure determination.

摘要

冷冻电子显微镜技术是结构生物学领域的一种强大方法,已广泛应用于难以用传统技术获得的高分辨率结构测定的挑战性样品中。特别是,超级大分子复合物的优势以及冷冻电镜不需要晶体的特点,使得该技术可用于抗病毒先天免疫复合物的结构研究。本章以 STING 为例,介绍了用于确定复合物结构的冷冻电镜的详细信息和实验步骤。这些步骤包括样品质量检查、高分辨率数据采集和冷冻电镜 3D 结构测定的图像处理。

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1
Cryo-Electron Microscopy in the Study of Antiviral Innate Immunity.冷冻电镜在抗病毒先天免疫研究中的应用。
Methods Mol Biol. 2025;2854:177-188. doi: 10.1007/978-1-0716-4108-8_18.
2
Sample preparation of biological macromolecular assemblies for the determination of high-resolution structures by cryo-electron microscopy.用于通过冷冻电子显微镜测定高分辨率结构的生物大分子组装体的样品制备。
Microscopy (Oxf). 2016 Feb;65(1):23-34. doi: 10.1093/jmicro/dfv367. Epub 2015 Dec 15.
3
Rapid increase of near atomic resolution virus capsid structures determined by cryo-electron microscopy.通过冷冻电镜快速解析近原子分辨率的病毒衣壳结构。
J Struct Biol. 2018 Jan;201(1):1-4. doi: 10.1016/j.jsb.2017.10.007. Epub 2017 Oct 27.
4
Processing of Structurally Heterogeneous Cryo-EM Data in RELION.RELION中结构异质冷冻电镜数据的处理
Methods Enzymol. 2016;579:125-57. doi: 10.1016/bs.mie.2016.04.012. Epub 2016 May 31.
5
Combining high throughput and high quality for cryo-electron microscopy data collection.高通量与高质量相结合的冷冻电镜数据采集。
Acta Crystallogr D Struct Biol. 2020 Aug 1;76(Pt 8):724-728. doi: 10.1107/S2059798320008347. Epub 2020 Jul 27.
6
Applying a Modified Wavelet Shrinkage Filter to Improve Cryo-Electron Microscopy Imaging.应用改进的小波收缩滤波器改善冷冻电子显微镜成像。
J Comput Biol. 2018 Sep;25(9):1050-1058. doi: 10.1089/cmb.2018.0060. Epub 2018 Jun 21.
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Volta phase plate data collection facilitates image processing and cryo-EM structure determination.反转相位板数据收集有助于图像处理和冷冻电镜结构测定。
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Single particle analysis at high resolution.高分辨率单颗粒分析
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Visualization of biological macromolecules at near-atomic resolution: cryo-electron microscopy comes of age.近原子分辨率下生物大分子的可视化:冷冻电子显微镜走向成熟。
Acta Crystallogr F Struct Biol Commun. 2019 Jan 1;75(Pt 1):3-11. doi: 10.1107/S2053230X18015133.
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How cryo-EM is revolutionizing structural biology.冷冻电镜如何引发结构生物学的革命。
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本文引用的文献

1
Structure of the interleukin-5 receptor complex exemplifies the organizing principle of common beta cytokine signaling.白细胞介素-5 受体复合物的结构例证了常见β细胞因子信号传导的组织原则。
Mol Cell. 2024 May 16;84(10):1995-2005.e7. doi: 10.1016/j.molcel.2024.03.023. Epub 2024 Apr 12.
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Applications of cryo-EM in drug development for STING.冷冻电镜在STING药物研发中的应用。
Curr Opin Struct Biol. 2024 Feb;84:102767. doi: 10.1016/j.sbi.2023.102767. Epub 2024 Jan 5.
3
The RIG-I receptor adopts two different conformations for distinguishing host from viral RNA ligands.
RIG-I 受体采用两种不同构象来区分宿主和病毒 RNA 配体。
Mol Cell. 2022 Nov 3;82(21):4131-4144.e6. doi: 10.1016/j.molcel.2022.09.029. Epub 2022 Oct 21.
4
Cryo-EM structures of STING reveal its mechanism of activation by cyclic GMP-AMP.冷冻电镜结构揭示了 STING 通过环鸟苷酸-腺苷酸激活的机制。
Nature. 2019 Mar;567(7748):389-393. doi: 10.1038/s41586-019-0998-5. Epub 2019 Mar 6.
5
A brief introduction of cryo-EM revolution-the Nobel Prize in Chemistry 2017.冷冻电镜技术的变革简介——2017年诺贝尔化学奖
Sci China Life Sci. 2018 Mar;61(3):368-370. doi: 10.1007/s11427-017-9215-3. Epub 2018 Jan 2.
6
A pipeline approach to single-particle processing in RELION.在 RELION 中采用流水线方法进行单颗粒处理。
Acta Crystallogr D Struct Biol. 2017 Jun 1;73(Pt 6):496-502. doi: 10.1107/S2059798316019276. Epub 2017 Apr 20.
7
cryoSPARC: algorithms for rapid unsupervised cryo-EM structure determination.cryoSPARC:用于快速无监督低温电子显微镜结构测定的算法。
Nat Methods. 2017 Mar;14(3):290-296. doi: 10.1038/nmeth.4169. Epub 2017 Feb 6.
8
Structure determination of a human virus by the combination of cryo-EM and X-ray crystallography.通过冷冻电子显微镜与X射线晶体学相结合的方法确定一种人类病毒的结构。
Biophys Rep. 2016;2(2):55-68. doi: 10.1007/s41048-016-0027-2. Epub 2016 Sep 2.
9
Exploring the inside details of virions by electron microscopy.通过电子显微镜探索病毒粒子的内部细节。
Biophys Rep. 2016;2(1):21-24. doi: 10.1007/s41048-016-0022-7. Epub 2016 Apr 22.
10
Structure and assembly model for the Trypanosoma cruzi 60S ribosomal subunit.克氏锥虫60S核糖体亚基的结构与组装模型
Proc Natl Acad Sci U S A. 2016 Oct 25;113(43):12174-12179. doi: 10.1073/pnas.1614594113. Epub 2016 Oct 10.