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E_15.1:通过全基因组综合分析、表型分析及促进植物生长试验揭示的一种来自火山口的新型嗜热内生菌

E_15.1: A Novel Thermophilic Endophyte from a Volcanic Crater Unveiled through Comprehensive Genome-Wide, Phenotypic Analysis, and Plant Growth-Promoting Trails.

作者信息

Martirena-Ramírez Amanda, Serrano-Gamboa José Germán, Pérez-Llano Yordanis, Zenteno-Alegría Claribel Orquídea, Iza-Arteaga Mario León, Del Rayo Sánchez-Carbente María, Fernández-Ocaña Ana María, Batista-García Ramón Alberto, Folch-Mallol Jorge Luis

机构信息

Centro de Investigación en Biotecnología, Universidad Autónoma del Estado de Morelos, Cuernavaca 62209, Morelos, Mexico.

Centro de Ciencias Genómicas, Universidad Autónoma del Estado de Morelos, Cuernavaca 62209, Morelos, Mexico.

出版信息

J Fungi (Basel). 2024 Jul 25;10(8):517. doi: 10.3390/jof10080517.

Abstract

Thermophilic fungi have been seldom studied despite the fact that they can contribute to understanding ecological mechanisms of adaptation in diverse environments and have attractive toolboxes with a wide range of biotechnological applications. This work describes for the first time an endophytic and thermophilic strain of that was isolated in the crater of the active volcano "El Chichonal" in Mexico. This strain was capable of surviving in soil with a temperature of 60 °C and a pH of neutral acidity, which preluded a high thermostability and a potential in industrial application. The complete genome of E_15.1 was sequenced and assembled in 37 Mb of genomic DNA. We performed a comprehensive phylogenomic analysis for the precise taxonomic identification of this species as a novel strain of . Likewise, the predicted coding sequences were classified according to various functions including Carbohydrate-Active Enzymes (CAZymes), biosynthetic gene clusters of secondary metabolites (BGCs), and metabolic pathways associated with plant growth promotion. E_15.1 was found to degrade chitin, chitooligosaccharides, xylan, and cellulose. The genes to biosynthesize clavaric acid (a triterpene with antitumor activity) were found, thus probably having antitumor activity. In addition to the genomic analysis, a set of enzymatic assays confirmed the thermostability of extracellular xylanases and cellulases of E_15.1. The enzymatic repertoire of E_15.1 suggests that E_15.1 has a high potential for industrial application due to its thermostability and can promote plant growth at high temperatures. Finally, this strain constitutes an interesting source of terpenoids with pharmacological activity.

摘要

尽管嗜热真菌有助于理解不同环境中的生态适应机制,并且拥有一系列具有广泛生物技术应用的诱人工具箱,但对它们的研究却很少。这项工作首次描述了从墨西哥活火山“埃尔奇乔纳尔”火山口分离出的一种内生嗜热菌株。该菌株能够在温度为60°C且pH呈中性酸性的土壤中存活,这预示着它具有很高的热稳定性和工业应用潜力。对E_15.1的完整基因组进行了测序,并组装成37 Mb的基因组DNA。我们进行了全面的系统基因组分析,以精确鉴定该物种为一种新型的[具体物种]菌株。同样,根据各种功能对预测的编码序列进行了分类,包括碳水化合物活性酶(CAZymes)、次生代谢物的生物合成基因簇(BGCs)以及与植物生长促进相关的代谢途径。发现E_15.1能够降解几丁质、壳寡糖、木聚糖和纤维素。还发现了生物合成克拉瓦酸(一种具有抗肿瘤活性的三萜)的基因,因此可能具有抗肿瘤活性。除了基因组分析外,一组酶活性测定证实了E_15.1细胞外木聚糖酶和纤维素酶的热稳定性。E_15.1的酶库表明,由于其热稳定性,E_15.1在工业应用方面具有很高的潜力,并且能够在高温下促进植物生长。最后,该菌株是具有药理活性的萜类化合物的一个有趣来源。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/16df/11355416/0499f3c527aa/jof-10-00517-g001.jpg

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