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利用全转录组测序筛选杜洛克×巴马香猪杂交猪中与产肉性状相关的基因

Screening for Genes Related to Meat Production Traits in Duroc × Bama Xiang Crossbred Pigs by Whole Transcriptome Sequencing.

作者信息

Xu Yupei, Wang Hui, Cheng Feng, Chen Kuirong, Lei Guofeng, Deng Zhongrong, Wu Xiaoxiao, Liu Cong, Si Jinglei, Liang Jing

机构信息

College of Animal Science & Technology, Guangxi University, Nanning 530004, China.

Guangxi State Farms Yongxin Animal Husbandry Group Co., Ltd., Nanning 530022, China.

出版信息

Animals (Basel). 2024 Aug 14;14(16):2347. doi: 10.3390/ani14162347.

Abstract

The meat production traits of pigs are influenced by the expression regulation of multiple gene types, including mRNAs, miRNAs, and lncRNAs. To study the differences in meat production traits at the transcriptional level among individuals with different growth rates, the samples from eight Duroc × Bama Xiang F2 crossbred pigs with a fast growth rate (high gTroup) or a slow growth rate (low group) were selected to perform whole transcriptome sequencing and ceRNA regulatory network construction. This study first analyzed the differences in physiological and biochemical indicators, muscle histological characteristics, and muscle fiber types. A total of 248 mRNAs, 25 miRNAs, and 432 lncRNAs were identified as differentially expressed by whole transcriptome sequencing. Key genes that may influence meat production traits include , , , , , and . The ceRNA regulatory network map showed that ENSSSCG00000042061-ssc-mir-208b-, ENSSSCG00000042223-ssc-mir-146a-, ENSSSCG00000045539-ssc-mir-9-3-, and ENSSSCG00000047852-ssc-mir-103-1- may be the key factors affecting meat production traits through their regulatory relationships. This study provides valuable insights into the molecular mechanisms underlying porcine muscle development and can aid in improving meat production traits.

摘要

猪的产肉性状受多种基因类型的表达调控影响,包括mRNA、miRNA和lncRNA。为了研究不同生长速率个体在转录水平上产肉性状的差异,选取了8头生长速率快(高生长组)或生长速率慢(低生长组)的杜洛克×巴马香猪F2杂交猪的样本进行全转录组测序和ceRNA调控网络构建。本研究首先分析了生理生化指标、肌肉组织学特征和肌纤维类型的差异。通过全转录组测序共鉴定出248个差异表达的mRNA、25个差异表达的miRNA和432个差异表达的lncRNA。可能影响产肉性状的关键基因包括 、 、 、 、 和 。ceRNA调控网络图显示,ENSSSCG00000042061-ssc-mir-208b-、ENSSSCG00000042223-ssc-mir-146a-、ENSSSCG00000045539-ssc-mir-9-3-和ENSSSCG00000047852-ssc-mir-103-1-可能通过其调控关系成为影响产肉性状的关键因素。本研究为猪肌肉发育的分子机制提供了有价值的见解,并有助于改善产肉性状。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fc2f/11350711/5f28a0e27cbe/animals-14-02347-g001.jpg

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