Suppr超能文献

氢键增强受氢体基团:C-H···O=C 键的奇异案例。

Hydrogen Bond Strengthens Acceptor Group: The Curious Case of the C-H···O=C Bond.

机构信息

Department of Biological Chemistry, The Alexander Silberman Institute of Life Sciences, The Hebrew University of Jerusalem, Edmond J. Safra Campus, Jerusalem 9190400, Israel.

The Alexander Grass Center for Bioengineering, Benin School of Computer Science and Engineering, The Hebrew University of Jerusalem, Edmond J. Safra Campus, Jerusalem 9190400, Israel.

出版信息

Int J Mol Sci. 2024 Aug 7;25(16):8606. doi: 10.3390/ijms25168606.

Abstract

An H-bond involves the sharing of a hydrogen atom between an electronegative atom to which it is covalently bound (the donor) and another electronegative atom serving as an acceptor. Such bonds represent a critically important geometrical force in biological macromolecules and, as such, have been characterized extensively. H-bond formation invariably leads to a weakening within the acceptor moiety due to the pulling exerted by the donor hydrogen. This phenomenon can be compared to a spring connecting two masses; pulling one mass stretches the spring, similarly affecting the bond between the two masses. Herein, we describe the opposite phenomenon when investigating the energetics of the C-H···O=C bond. This bond underpins the most prevalent protein transmembrane dimerization motif (GxxxG) in which a glycine Cα-H on one helix forms a hydrogen bond with a carbonyl in a nearby helix. We use isotope-edited FT-IR spectroscopy and corroborating computational approaches to demonstrate a surprising strengthening of the acceptor C=O bond upon binding with the glycine Cα-H. We show that electronic factors associated with the Cα-H bond strengthen the C=O oscillator by increasing the -character of the σ-bond, lowering the hyperconjugative disruption of the π-bond. In addition, a reduction of the acceptor C=O bond's polarity is observed upon the formation of the C-H···O=C bond. Our findings challenge the conventional understanding of H-bond dynamics and provide new insights into the structural stability of inter-helical protein interactions.

摘要

氢键涉及到一个氢原子在共价键合的电负性原子(供体)和另一个充当受体的电负性原子之间的共享。这种键代表了生物大分子中一种极其重要的几何力,因此已经得到了广泛的研究。氢键的形成总是会导致受体部分的弱化,因为供体氢会产生拉力。这种现象可以比作连接两个质量的弹簧;拉一个质量会拉伸弹簧,同样会影响两个质量之间的键。在此,我们描述了在研究 C-H···O=C 键的能量学性质时相反的现象。这个键支撑着最普遍的蛋白质跨膜二聚化基序(GxxxG),其中一个螺旋上的甘氨酸 Cα-H 与附近螺旋上的羰基形成氢键。我们使用同位素编辑的傅里叶变换红外光谱(FT-IR)和相关的计算方法证明,在与甘氨酸 Cα-H 结合时,受体 C=O 键会出人意料地增强。我们表明,与 Cα-H 键相关的电子因素通过增加 σ 键的 - 特征,降低 π 键的超共轭破坏,从而增强 C=O 振子。此外,在形成 C-H···O=C 键时,受体 C=O 键的极性会降低。我们的发现挑战了对氢键动力学的传统理解,并为螺旋间蛋白质相互作用的结构稳定性提供了新的见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a793/11354782/384e6ffe5b88/ijms-25-08606-g001.jpg

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验