Sailer Anna-Lena, Jevtic Zivojin, Stoll Britta, Wörtz Julia, Sharma Kundan, Urlaub Henning, Dyall-Smith Mike, Pfeiffer Friedhelm, Marchfelder Anita, Lenz Christof
Biology II, Ulm University, Ulm, Germany.
Department of Biomedicine, University Children's Hospital, University of Basel, Basel, Switzerland.
Front Microbiol. 2024 Aug 14;15:1422844. doi: 10.3389/fmicb.2024.1422844. eCollection 2024.
The response of the haloarchaeal model organism to iron starvation was analyzed at the proteome level by data-independent acquisition mass spectrometry. Cells grown in minimal medium with normal iron levels were compared to those grown under low iron conditions, with samples being separated into membrane and cytoplasmic fractions in order to focus on import/export processes which are frequently associated with metal homeostasis. Iron starvation not only caused a severe retardation of growth but also altered the levels of many proteins. Using a comprehensive annotated spectral library and data-independent acquisition mass spectrometry (DIA-MS), we found that iron starvation resulted in significant changes to both the membrane and the soluble proteomes of . The most affected protein is the RND family permease HVO_A0467, which is 44-fold enriched in cells grown under iron starvation. The gene HVO_A0467 can be deleted suggesting that it is not essential under standard conditions. Compared to wild type cells the deletion strain shows only slight changes in growth and cell morphologies show no differences. Molecular docking predictions indicated that HVO_A0467 may be an exporter of the siderophore schizokinen for which a potential biosynthesis cluster is encoded in the genome. Together, these findings confirm the importance of iron for archaeal cells and suggest HVO_0467 as a siderophore exporter.
通过数据非依赖采集质谱技术,在蛋白质组水平分析了嗜盐古菌模式生物对铁饥饿的反应。将在正常铁水平的基本培养基中生长的细胞与在低铁条件下生长的细胞进行比较,样本被分离为膜和细胞质部分,以便聚焦于经常与金属稳态相关的输入/输出过程。铁饥饿不仅导致生长严重迟缓,还改变了许多蛋白质的水平。使用一个全面注释的光谱库和数据非依赖采集质谱技术(DIA-MS),我们发现铁饥饿导致了嗜盐古菌的膜蛋白质组和可溶性蛋白质组都发生了显著变化。受影响最大的蛋白质是RND家族通透酶HVO_A0467,在铁饥饿条件下生长的细胞中其丰度富集了44倍。基因HVO_A0467可以被删除,这表明它在标准条件下不是必需的。与野生型细胞相比,缺失菌株在生长方面仅表现出轻微变化,细胞形态没有差异。分子对接预测表明,HVO_A0467可能是铁载体schizokinen的输出蛋白,其潜在的生物合成簇在基因组中编码。总之,这些发现证实了铁对古菌细胞的重要性,并表明HVO_0467是一种铁载体输出蛋白。