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罂粟主要乳胶蛋白中配体触发的分子间二硫键开关的结构分析。

Structural analysis of a ligand-triggered intermolecular disulfide switch in a major latex protein from opium poppy.

机构信息

Department of Biological Sciences, University of Calgary, Calgary, Alberta T2N 1N4, Canada.

出版信息

Acta Crystallogr D Struct Biol. 2024 Sep 1;80(Pt 9):675-685. doi: 10.1107/S2059798324007733. Epub 2024 Aug 29.

DOI:10.1107/S2059798324007733
PMID:39207895
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11394122/
Abstract

Several proteins from plant pathogenesis-related family 10 (PR10) are highly abundant in the latex of opium poppy and have recently been shown to play diverse and important roles in the biosynthesis of benzylisoquinoline alkaloids (BIAs). The recent determination of the first crystal structures of PR10-10 showed how large conformational changes in a surface loop and adjacent β-strand are coupled to the binding of BIA compounds to the central hydrophobic binding pocket. A more detailed analysis of these conformational changes is now reported to further clarify how ligand binding is coupled to the formation and cleavage of an intermolecular disulfide bond that is only sterically allowed when the BIA binding pocket is empty. To decouple ligand binding from disulfide-bond formation, each of the two highly conserved cysteine residues (Cys59 and Cys155) in PR10-10 was replaced with serine using site-directed mutagenesis. Crystal structures of the Cys59Ser mutant were determined in the presence of papaverine and in the absence of exogenous BIA compounds. A crystal structure of the Cys155Ser mutant was also determined in the absence of exogenous BIA compounds. All three of these crystal structures reveal conformations similar to that of wild-type PR10-10 with bound BIA compounds. In the absence of exogenous BIA compounds, the Cys59Ser and Cys155Ser mutants appear to bind an unidentified ligand or mixture of ligands that was presumably introduced during expression of the proteins in Escherichia coli. The analysis of conformational changes triggered by the binding of BIA compounds suggests a molecular mechanism coupling ligand binding to the disruption of an intermolecular disulfide bond. This mechanism may be involved in the regulation of biosynthetic reactions in plants and possibly other organisms.

摘要

几种植物病程相关蛋白家族 10(PR10)的蛋白大量存在于罂粟乳胶中,最近的研究表明,它们在苯并异喹啉生物碱(BIAs)的生物合成中发挥着多样化和重要的作用。最近首次确定了 PR10-10 的晶体结构,显示了表面环和相邻β-链中的大构象变化如何与 BIA 化合物与中央疏水性结合口袋的结合相耦合。现在报告了对这些构象变化的更详细分析,以进一步阐明配体结合如何与形成和裂解仅在 BIA 结合口袋为空时才允许的分子间二硫键相耦合。为了将配体结合与二硫键形成解偶联,使用定点突变将 PR10-10 中的两个高度保守的半胱氨酸残基(Cys59 和 Cys155)中的每一个替换为丝氨酸。在存在罂粟碱和不存在外源 BIA 化合物的情况下,确定了 Cys59Ser 突变体的晶体结构。还在不存在外源 BIA 化合物的情况下确定了 Cys155Ser 突变体的晶体结构。这三种晶体结构都揭示了与结合有 BIA 化合物的野生型 PR10-10 相似的构象。在不存在外源 BIA 化合物的情况下,Cys59Ser 和 Cys155Ser 突变体似乎结合了一种未鉴定的配体或配体混合物,这些配体可能是在大肠杆菌中表达这些蛋白质时引入的。对 BIA 化合物结合引发的构象变化的分析表明,一种将配体结合与分子间二硫键的破坏相耦合的分子机制。这种机制可能参与植物和可能其他生物体中生物合成反应的调节。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2300/11394122/39f93aa78ac2/d-80-00675-fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2300/11394122/43681dfecddb/d-80-00675-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2300/11394122/44236dd5b0c4/d-80-00675-fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2300/11394122/a0dc5f6ecdaf/d-80-00675-fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2300/11394122/a1b0aa4a58d1/d-80-00675-fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2300/11394122/39f93aa78ac2/d-80-00675-fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2300/11394122/43681dfecddb/d-80-00675-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2300/11394122/44236dd5b0c4/d-80-00675-fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2300/11394122/a0dc5f6ecdaf/d-80-00675-fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2300/11394122/a1b0aa4a58d1/d-80-00675-fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2300/11394122/39f93aa78ac2/d-80-00675-fig5.jpg

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本文引用的文献

1
Alkaloid binding to opium poppy major latex proteins triggers structural modification and functional aggregation.生物碱与罂粟大乳蛋白结合会引发结构修饰和功能聚集。
Nat Commun. 2022 Nov 9;13(1):6768. doi: 10.1038/s41467-022-34313-6.
2
Structural studies of codeinone reductase reveal novel insights into aldo-keto reductase function in benzylisoquinoline alkaloid biosynthesis.阿片酮还原酶的结构研究揭示了阿片酮还原酶在苄基异喹啉生物碱生物合成中醛酮还原酶功能的新见解。
J Biol Chem. 2021 Oct;297(4):101211. doi: 10.1016/j.jbc.2021.101211. Epub 2021 Sep 20.
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PR10/Bet v1-like Proteins as Novel Contributors to Plant Biochemical Diversity.
PR10/Bet v1 类蛋白作为植物生化多样性的新贡献者。
Chembiochem. 2021 Jan 15;22(2):264-287. doi: 10.1002/cbic.202000354. Epub 2020 Sep 7.
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Neopinone isomerase is involved in codeine and morphine biosynthesis in opium poppy.内啡肽异构酶参与罂粟中可待因和吗啡的生物合成。
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Allosteric disulfides: Sophisticated molecular structures enabling flexible protein regulation.变构二硫键:精巧的分子结构,实现蛋白质的灵活调控。
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Codeinone reductase isoforms with differential stability, efficiency and product selectivity in opium poppy.罂粟中具有不同稳定性、效率和产物选择性的可待因酮还原酶同工型。
Plant J. 2018 May 19. doi: 10.1111/tpj.13975.
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Polder maps: improving OMIT maps by excluding bulk solvent.Polder 图:通过排除主体溶剂来改进 OMIT 图。
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