Biology Department, Faculty of Sciences, University of Porto, Porto, 4169-007, Portugal.
LAQV-REQUIMTE, Faculty of Sciences, University of Porto, Porto, 4050-453, Portugal.
BMC Genomics. 2024 Aug 29;25(1):813. doi: 10.1186/s12864-024-10739-8.
The invasive pest Spotted-Wing Drosophila, Drosophila suzukii (Matsumura), causes extensive damage and production losses of soft-skinned fruits. Native to Asia, the species has now spread worldwide, with first reports in Portugal in 2012. In this study, we focus on the genomic signatures of the recent Portuguese invasion, in the context of worldwide patterns established in previous works. We analyzed whole genome pool sequencing data from three Portuguese populations (N = 240) sampled in 2019 and 2021.
The correlation of allele frequencies suggested that Portuguese populations are related to South European ones, indicating a Mediterranean invasion route. While two populations exhibited levels of genetic variation comparable to others in the invasive range, a third showed low levels of genetic diversity, which may result from a recent colonization of the region. Genome-wide analyses of natural selection identified ten genes previously associated with D. suzukii's invasive capacity, which may have contributed to the species' success in Portugal. Additionally, we pinpointed six genes evolving under positive selection across Portuguese populations but not in European ones, which is indicative of local adaptation. One of these genes, nAChRalpha7, encodes a nicotinic acetylcholine receptor, which are known targets for insecticides widely used for D. suzukii control, such as neonicotinoids and spinosyns. Although spinosyn resistance has been associated with mutations in the nAChRalpha6 in other Drosophila species, the putative role of nAChRalpha7 in insecticide resistance and local adaptation in Portuguese D. suzukii populations encourages future investigation.
Our results highlight the complex nature of rapid species invasions and the role of rapid local adaptation in determining the invasive capacity of these species.
入侵害虫斑翅果蝇 Drosophila suzukii (Matsumura) 对软皮水果造成了广泛的破坏和产量损失。该物种原产于亚洲,现已在全球范围内传播,2012 年首次在葡萄牙报告。在这项研究中,我们专注于最近葡萄牙入侵的基因组特征,这是在以前的工作中建立的全球模式的背景下进行的。我们分析了 2019 年和 2021 年从三个葡萄牙种群(N=240)中采集的全基因组池测序数据。
等位基因频率的相关性表明,葡萄牙种群与南欧种群有关,表明入侵途径是地中海。虽然两个种群表现出与入侵范围其他种群相当的遗传变异水平,但第三个种群表现出较低的遗传多样性,这可能是该地区最近殖民化的结果。对自然选择的全基因组分析鉴定了十个先前与 D. suzukii 入侵能力相关的基因,这些基因可能有助于该物种在葡萄牙的成功。此外,我们发现了六个在葡萄牙种群中受到正选择进化但在欧洲种群中没有的基因,这表明了局部适应。这些基因中的一个,nAChRalpha7,编码一种烟碱型乙酰胆碱受体,这些受体是广泛用于 D. suzukii 控制的杀虫剂的已知靶标,例如新烟碱类和多杀菌素。尽管 nAChRalpha6 的突变与其他果蝇物种的新烟碱类抗性有关,但 nAChRalpha7 在葡萄牙 D. suzukii 种群中的杀虫剂抗性和局部适应中的潜在作用鼓励未来进行调查。
我们的研究结果突出了快速物种入侵的复杂性质以及快速局部适应在确定这些物种的入侵能力方面的作用。