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谵妄和阿尔茨海默病的常见分子和病理生理学基础:分子特征和治疗指征。

Common molecular and pathophysiological underpinnings of delirium and Alzheimer's disease: molecular signatures and therapeutic indications.

机构信息

School of Business, Faculty of Business, Education, Law and Arts, University of Southern Queensland, Toowoomba, QLD, 4350, Australia.

Bioinformatics Lab, Department of Statistics, University of Rajshahi, Rajshahi, 6205, Bangladesh.

出版信息

BMC Geriatr. 2024 Aug 29;24(1):716. doi: 10.1186/s12877-024-05289-3.

Abstract

BACKGROUND

Delirium and Alzheimer's disease (AD) are common causes of cognitive dysfunction among older adults. These neurodegenerative diseases share a common and complex relationship, and can occur individually or concurrently, increasing the chance of permanent mental dysfunction. However, the common molecular pathophysiology, key proteomic biomarkers, and functional pathways are largely unknown, whereby delirium is superimposed on AD and dementia.

METHODS

We employed an integrated bioinformatics and system biology analysis approach to decipher such common key proteomic signatures, pathophysiological links between delirium and AD by analyzing the gene expression data of AD-affected human brain samples and comparing them with delirium-associated proteins. The present study identified the common drug target hub-proteins examining the protein-protein interaction (PPI) and gene regulatory network analysis. The functional enrichment and pathway analysis was conducted to reveal the common pathophysiological relationship. Finally, the molecular docking and dynamic simulation was used to computationally identify and validate the potential drug target and repurposable drugs for delirium and AD.

RESULTS

We detected 99 shared differentially expressed genes (sDEGs) associated with AD and delirium. The sDEGs-set enrichment analysis detected the transmission across chemical synapses, neurodegeneration pathways, neuroinflammation and glutamatergic signaling pathway, oxidative stress, and BDNF signaling pathway as the most significant signaling pathways shared by delirium and AD. The disease-sDEGs interaction analysis highlighted the other disease risk factors with delirium and AD development and progression. Among the sDEGs of delirium and AD, the top 10 hub-proteins including ALB, APP, BDNF, CREB1, DLG4, GAD1, GAD2, GFAP, GRIN2B and GRIN2A were found by the PPI network analysis. Based on the maximum molecular docking binding affinities and molecular dynamic simulation (100 ns) results, the ALB and GAD2 were found as prominent drug target proteins when tacrine and donepezil were identified as potential drug candidates for delirium and AD.

CONCLUSION

The study outlined the common key biomolecules and biological pathways shared by delirium and AD. The computationally reported potential drug molecules need a deeper investigation including clinical trials to validate their effectiveness. The outcomes from this study will help to understand the typical pathophysiological relationship between delirium and AD and flag future therapeutic development research for delirium.

摘要

背景

谵妄和阿尔茨海默病(AD)是老年人认知功能障碍的常见原因。这些神经退行性疾病有着共同而复杂的关系,可以单独发生,也可以同时发生,增加了永久性精神功能障碍的机会。然而,共同的分子病理生理学、关键蛋白质组生物标志物和功能途径在很大程度上尚不清楚,谵妄是在 AD 和痴呆的基础上发生的。

方法

我们采用综合生物信息学和系统生物学分析方法,通过分析受 AD 影响的人类大脑样本的基因表达数据,并将其与谵妄相关蛋白进行比较,来破译这些共同的关键蛋白质组特征、谵妄和 AD 之间的病理生理学联系。本研究通过检查蛋白质-蛋白质相互作用(PPI)和基因调控网络分析,确定了共同的药物靶标枢纽蛋白。进行功能富集和途径分析,以揭示共同的病理生理学关系。最后,通过分子对接和动态模拟,从计算上识别和验证谵妄和 AD 的潜在药物靶标和可重新利用的药物。

结果

我们检测到 99 个与 AD 和谵妄相关的差异表达基因(sDEGs)。sDEGs 集富集分析检测到化学突触传递、神经退行性变途径、神经炎症和谷氨酸能信号通路、氧化应激和 BDNF 信号通路是谵妄和 AD 最显著的共同信号通路。疾病-sDEGs 相互作用分析突出了其他与谵妄和 AD 发展和进展相关的疾病风险因素。在谵妄和 AD 的 sDEGs 中,通过 PPI 网络分析发现了 ALB、APP、BDNF、CREB1、DLG4、GAD1、GAD2、GFAP、GRIN2B 和 GRIN2A 等前 10 个枢纽蛋白。基于最大分子对接结合亲和力和分子动力学模拟(100ns)结果,当他克林和多奈哌齐被确定为谵妄和 AD 的潜在药物候选物时,ALB 和 GAD2 被发现为突出的药物靶标蛋白。

结论

本研究概述了谵妄和 AD 共同的关键生物分子和生物学途径。报告的潜在药物分子需要更深入的研究,包括临床试验,以验证其有效性。这项研究的结果将有助于理解谵妄和 AD 之间的典型病理生理学关系,并为未来的谵妄治疗发展研究提供方向。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8d4e/11363673/4af0524aa99d/12877_2024_5289_Fig1_HTML.jpg

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