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柑橘（L.）根内生微生物组的鸟枪法宏基因组数据集。

Shotgun metagenomic dataset of root endophytic microbiome of citrus ( L.).

作者信息

Tran Dinh Minh, Nguyen Dinh Sy, Nguyen Thi Huyen, Tran Thi Phuong Hanh, Nguyen Anh Dzung

机构信息

Institute of Biotechnology and Environment, Tay Nguyen University, Buon Ma Thuot, Dak Lak 630000, Vietnam.

Faculty of Natural Science and Technology, Tay Nguyen University, Buon Ma Thuot, Dak Lak 630000, Vietnam.

出版信息

Data Brief. 2024 Jul 31;56:110777. doi: 10.1016/j.dib.2024.110777. eCollection 2024 Oct.

DOI:10.1016/j.dib.2024.110777
PMID:39211485
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11357868/
Abstract

Citrus ( L.) is one of the main fruit crops in Dak Lak Province of Vietnam; however, a dataset on the endophytic microbiome of this plant has yet to be discovered. This article presented the endophytic microbial dataset from roots of healthy L. collected in Dak Lak for the first time. We found that 4 kingdoms, 30 phyla, 58 classes, 125 orders, 242 families, 722 genera, and 1637 species of endophytic microorganisms were identified from the sample. was shown to be the main phylum (64.36 %) and biosynthesis to be the most abundant function (55.64 %) of the endophytic microbial community. Data provided insights into the composition and functional diversity of the L. endophytic microbiome, especially novel microbial resources. They could be used for the next works towards applying the endophytic microbiome for sustainable citrus production.

摘要

柑橘属（L.）是越南多乐省的主要水果作物之一；然而，关于这种植物内生微生物组的数据集尚未被发现。本文首次展示了从多乐省采集的健康L.根系的内生微生物数据集。我们发现从样本中鉴定出了4个界、30个门、58个纲、125个目、242个科、722个属和1637种内生微生物。显示为主要门（64.36%），生物合成是内生微生物群落中最丰富的功能（55.64%）。数据为L.内生微生物组的组成和功能多样性提供了见解，特别是新型微生物资源。它们可用于下一步将内生微生物组应用于可持续柑橘生产的工作。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4ea6/11357868/68f5a3aa251e/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4ea6/11357868/3d51eebe9375/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4ea6/11357868/68f5a3aa251e/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4ea6/11357868/3d51eebe9375/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4ea6/11357868/68f5a3aa251e/gr2.jpg

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本文引用的文献

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Data Brief. 2024 Jan 9;52:110039. doi: 10.1016/j.dib.2024.110039. eCollection 2024 Feb.
2
Endophytic bacterial dataset of the Cavendish banana grown in Dak Lak Province of Vietnam using 16S rRNA gene metabarcoding.利用16S rRNA基因宏条形码技术对越南多乐省种植的卡文迪什香蕉内生细菌数据集进行分析。
Data Brief. 2023 Dec 7;52:109863. doi: 10.1016/j.dib.2023.109863. eCollection 2024 Feb.
3
Rice ( L.) cultivated in the Central Highlands of Vietnam: Dataset on the endophytic microbiome.
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Data Brief. 2023 Sep 7;50:109551. doi: 10.1016/j.dib.2023.109551. eCollection 2023 Oct.
4
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The role of plant-associated rhizobacteria in plant growth, biocontrol and abiotic stress management.植物相关根际细菌在植物生长、生物防治和非生物胁迫管理中的作用。
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