Le Lan-Anh, Nguyen-Hoang Thien-Phuc, Huynh Van-Phuc, Nguyen Tan-Huy, Nguyen Thuy-Vy, Ho-Huynh Thuy-Duong
Khoa Thuong Biotechnology Company Limited, No 17, Street 4, Phong Phu, Binh Chanh, Ho Chi Minh, Vietnam.
Department of Genetics, Faculty of Biology and Biotechnology, University of Science, VNU-HCM, 227 Nguyen Van Cu Street, Ward 4, District 5, Ho Chi Minh, Vietnam.
Data Brief. 2020 May 21;31:105731. doi: 10.1016/j.dib.2020.105731. eCollection 2020 Aug.
Vietnam is one of the top shrimp producing and exporting countries in the world [1]. However, viral and bacterial epidemic diseases cause severe damages to shrimp farming, resulting in millions of US dollars losses annually [2]. Furthermore, inappropriate use of antibiotics in shrimp rearing lead to increased emergence of drug resistant pathogens [3]. Current practices for water quality control, mostly based on chemical and physical parameters; neglected biological criteria necessary for maintaining pond health. Ninh Thuan is a region situated in the South Central Coast of Vietnam. Due to its geographic location, a large part of this region is dedicated to shrimp ( post-larvae production and rearing. This article presents a microbiome dataset from two water samples collected in a shrimp rearing pond in Ninh Thuan. We used Oxford Nanopore Technologies (ONT) for metagenomic sequencing of the samples to characterize microbial communities and antibiotic resistance profiles. The metagenome dataset generated will provide an understanding and comparison framework of the microbial diversity and functionality among shrimp ponds with potential application in health management and shrimp rearing industry.
越南是世界上最大的虾类生产和出口国之一[1]。然而，病毒和细菌流行病对虾类养殖造成了严重破坏，每年造成数百万美元的损失[2]。此外，在虾类养殖中不当使用抗生素导致耐药病原体的出现增加[3]。目前的水质控制做法大多基于化学和物理参数，而忽视了维持池塘健康所需的生物学标准。宁顺是位于越南中南部海岸的一个地区。由于其地理位置，该地区的很大一部分用于虾类（幼体生产和养殖）。本文展示了从宁顺一个虾类养殖池塘采集的两个水样的微生物组数据集。我们使用牛津纳米孔技术（ONT）对样本进行宏基因组测序，以表征微生物群落和抗生素抗性谱。生成的宏基因组数据集将为虾塘之间的微生物多样性和功能提供一个理解和比较框架，在健康管理和虾类养殖行业具有潜在应用价值。
