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解析端粒长度与腹主动脉瘤之间的因果关联和潜在转录机制。

Deciphering the causal association and underlying transcriptional mechanisms between telomere length and abdominal aortic aneurysm.

机构信息

Department of Cardiology, Union Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China.

Hubei Key Laboratory of Biological Targeted Therapy, Union Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China.

出版信息

Front Immunol. 2024 Aug 21;15:1438838. doi: 10.3389/fimmu.2024.1438838. eCollection 2024.

Abstract

BACKGROUND

The purpose of this study is to investigate the causal effect and potential mechanisms between telomere length and abdominal aortic aneurysm (AAA).

METHODS

Summary statistics of telomere length and AAA were derived from IEU open genome-wide association studies and FinnGen R9, respectively. Bi-directional Mendelian randomization (MR) analysis was conducted to reveal the causal relationship between AAA and telomere length. Three transcriptome datasets were retrieved from the Gene Expression Omnibus database and telomere related genes was down-loaded from TelNet. The overlapping genes of AAA related differentially expressed genes (DEGs), module genes, and telomere related genes were used for further investigation. Telomere related diagnostic biomarkers of AAA were selected with machine learning algorisms and validated in datasets and murine AAA model. The correlation between biomarkers and immune infiltration landscape was established.

RESULTS

Telomere length was found to have a suggestive negative associations with AAA [IVW, OR 95%CI = 0.558 (0.317-0.701), P < 0.0001], while AAA showed no suggestive effect on telomere length [IVW, OR 95%CI = 0.997 (0.990-1.004), P = 0.4061]. A total of 40 genes was considered as telomere related DEGs of AAA. PLCH2, PRKCQ, and SMG1 were selected as biomarkers after multiple algorithms and validation. Immune infiltration analysis and single cell mRNA analysis revealed that PLCH2 and PRKCQ were mainly expressed on T cells, while SMG1 predominantly expressed on T cells, B cells, and monocytes. Murine AAA model experiments further validated the elevated expression of biomarkers.

CONCLUSION

We found a suggestive effect of telomere length on AAA and revealed the potential biomarkers and immune mechanism of telomere length on AAA. This may shed new light for diagnosis and therapeutics on AAA.

摘要

背景

本研究旨在探讨端粒长度与腹主动脉瘤(AAA)之间的因果关系和潜在机制。

方法

端粒长度和 AAA 的汇总统计数据分别来自 IEU 开放全基因组关联研究和 FinnGen R9。采用双向孟德尔随机化(MR)分析揭示 AAA 和端粒长度之间的因果关系。从基因表达综合数据库中检索了三个转录组数据集,并从 TelNet 下载了与端粒相关的基因。将 AAA 相关差异表达基因(DEG)、模块基因和与端粒相关的基因的重叠基因用于进一步研究。使用机器学习算法选择 AAA 的端粒相关诊断生物标志物,并在数据集和鼠 AAA 模型中进行验证。建立了生物标志物与免疫浸润图谱之间的相关性。

结果

端粒长度与 AAA 呈负相关[IVW,OR 95%CI=0.558(0.317-0.701),P<0.0001],而 AAA 对端粒长度无明显影响[IVW,OR 95%CI=0.997(0.990-1.004),P=0.4061]。共鉴定出 40 个与 AAA 相关的端粒差异表达基因。经过多种算法和验证,选择了 PLCH2、PRKCQ 和 SMG1 作为生物标志物。免疫浸润分析和单细胞 mRNA 分析显示,PLCH2 和 PRKCQ 主要表达于 T 细胞,而 SMG1 主要表达于 T 细胞、B 细胞和单核细胞。鼠 AAA 模型实验进一步验证了生物标志物的上调表达。

结论

我们发现端粒长度对 AAA 有提示性影响,并揭示了端粒长度对 AAA 的潜在生物标志物和免疫机制。这可能为 AAA 的诊断和治疗提供新的思路。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bf1b/11371612/ece2df88c0a4/fimmu-15-1438838-g001.jpg

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