Department of Microbiology and Cell Science, University of Florida, Gainesville, FL 32611, USA.
Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.
Microbiology (Reading). 2024 Sep;170(9). doi: 10.1099/mic.0.001490.
Queuosine (Q) stands out as the sole tRNA modification that can be synthesized via salvage pathways. Comparative genomic analyses identified specific bacteria that showed a discrepancy between the projected Q salvage route and the predicted substrate specificities of the two identified salvage proteins: (1) the distinctive enzyme tRNA guanine-34 transglycosylase (bacterial TGT, or bTGT), responsible for inserting precursor bases into target tRNAs; and (2) queuosine precursor transporter (QPTR), a transporter protein that imports Q precursors. Organisms such as the facultative intracellular pathogen , which possess only bTGT and QPTR but lack predicted enzymes for converting preQ to Q, would be expected to salvage the queuine (q) base, mirroring the scenario for the obligate intracellular pathogen . However, sequence analyses indicate that the substrate-specificity residues of their bTGTs resemble those of enzymes inserting preQ rather than q. Intriguingly, MS analyses of tRNA modification profiles in reveal trace amounts of preQ, previously not observed in a natural context. Complementation analysis demonstrates that bTGT and QPTR not only utilize preQ, akin to their counterparts, but can also process q when provided at elevated concentrations. The experimental and phylogenomic analyses suggest that the Q pathway in could represent an evolutionary transition among intracellular pathogens - from ancestors that synthesized Q to a state prioritizing the salvage of q. Another possibility that will require further investigations is that the insertion of preQ confers fitness advantages when is growing outside a mammalian host.
Queuosine (Q) 是唯一一种可以通过补救途径合成的 tRNA 修饰。比较基因组分析确定了一些特定的细菌,它们在预期的 Q 补救途径和两个已鉴定的补救蛋白的预测底物特异性之间存在差异:(1)独特的 tRNA 鸟嘌呤-34 转糖基酶(细菌 TGT,或 bTGT),负责将前体碱基插入靶 tRNA;(2)Queuosine 前体转运蛋白(QPTR),一种将 Q 前体导入的转运蛋白。像兼性细胞内病原体这样的生物体,只拥有 bTGT 和 QPTR,但缺乏将 preQ 转化为 Q 的预测酶,预计会补救 Queuine(q)碱基,反映出对专性细胞内病原体的情况。然而,序列分析表明,它们的 bTGT 的底物特异性残基类似于插入 preQ 而不是 q 的酶。有趣的是,对 中 tRNA 修饰谱的 MS 分析表明存在痕量的 preQ,以前在自然环境中没有观察到。互补分析表明, bTGT 和 QPTR 不仅像它们的 对应物一样利用 preQ,而且当提供高浓度的 q 时也可以处理 q。实验和系统发生基因组学分析表明, 在 中的 Q 途径可能代表了细胞内病原体之间的进化过渡-从合成 Q 的祖先到优先补救 q 的状态。另一种可能性是,当 在哺乳动物宿主外生长时,插入 preQ 会赋予适应性优势。