Jin Wei, Ni Yang, O'Halloran Jane, Spence Amanda B, Rubin Leah H, Xu Yanxun
Department of Applied Mathematics and Statistics, Johns Hopkins University.
Department of Statistics, Texas A&M University.
Ann Appl Stat. 2023 Dec;17(4):3035-3055. doi: 10.1214/23-aoas1750. Epub 2023 Oct 30.
Numerous adverse effects (e.g., depression) have been reported for combination antiretroviral therapy (cART) despite its remarkable success in viral suppression in people with HIV (PWH). To improve long-term health outcomes for PWH, there is an urgent need to design personalized optimal cART with the lowest risk of comorbidity in the emerging field of precision medicine for HIV. Large-scale HIV studies offer researchers unprecedented opportunities to optimize personalized cART in a data-driven manner. However, the large number of possible drug combinations for cART makes the estimation of cART effects a high-dimensional combinatorial problem, imposing challenges in both statistical inference and decision-making. We develop a two-step Bayesian decision framework for optimizing sequential cART assignments. In the first step, we propose a dynamic model for individuals' longitudinal observations using a multivariate Gaussian process. In the second step, we build a probabilistic generative model for cART assignments and design an uncertainty-penalized policy optimization using the uncertainty quantification from the first step. Applying the proposed method to a dataset from the Women's Interagency HIV Study, we demonstrate its clinical utility in assisting physicians to make effective treatment decisions, serving the purpose of both viral suppression and comorbidity risk reduction.
尽管联合抗逆转录病毒疗法(cART)在抑制HIV感染者(PWH)的病毒方面取得了显著成功,但仍有许多不良反应(如抑郁)被报道。为了改善PWH的长期健康结果,在新兴的HIV精准医学领域,迫切需要设计出合并症风险最低的个性化最佳cART。大规模的HIV研究为研究人员提供了前所未有的机会,以数据驱动的方式优化个性化cART。然而,cART的大量可能药物组合使得cART效果的估计成为一个高维组合问题,给统计推断和决策带来了挑战。我们开发了一个两步贝叶斯决策框架来优化序贯cART分配。第一步,我们使用多元高斯过程为个体的纵向观察提出一个动态模型。第二步,我们为cART分配构建一个概率生成模型,并利用第一步的不确定性量化设计一个不确定性惩罚策略优化。将所提出的方法应用于妇女机构间HIV研究的数据集,我们证明了其在协助医生做出有效治疗决策方面的临床效用,达到了抑制病毒和降低合并症风险的目的。