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自动化体内表型筛选平台,用于鉴定影响细胞再生动力学的因素。

Automated In Vivo Phenotypic Screening Platform for Identifying Factors that Affect Cell Regeneration Kinetics.

机构信息

Department of Ophthalmology, Wilmer Eye Institute, Johns Hopkins University School of Medicine, Baltimore, MD, USA.

Cellular and Molecular Medicine Program, Johns Hopkins University School of Medicine, Baltimore, MD, USA.

出版信息

Methods Mol Biol. 2025;2848:217-247. doi: 10.1007/978-1-0716-4087-6_14.

DOI:10.1007/978-1-0716-4087-6_14
PMID:39240526
Abstract

Various strategies for replacing retinal neurons lost in degenerative diseases are under investigation, including stimulating the endogenous regenerative capacity of Müller Glia (MG) as injury-inducible retinal stem cells. Inherently regenerative species, such as zebrafish, have provided key insights into mechanisms regulating MG dedifferentiation to a stem-like state and the proliferation of MG and MG-derived progenitor cells (MGPCs). Interestingly, promoting MG/MGPC proliferation is not sufficient for regeneration, yet mechanistic studies are often focused on this measure. To fully account for the regenerative process, and facilitate screens for factors regulating cell regeneration, an assay for quantifying cell replacement is required. Accordingly, we adapted an automated reporter-assisted phenotypic screening platform to quantify the pace of cellular regeneration kinetics following selective cell ablation in larval zebrafish. Here, we detail a method for using this approach to identify chemicals and genes that control the rate of retinal cell regeneration following selective retinal cell ablation.

摘要

各种替代退行性疾病中丧失的视网膜神经元的策略正在研究中,包括刺激 Muller 胶质细胞(MG)作为损伤诱导的视网膜干细胞的内源性再生能力。固有的再生物种,如斑马鱼,为调节 MG 去分化为干细胞样状态以及 MG 和 MG 衍生祖细胞(MGPC)的增殖的机制提供了关键见解。有趣的是,促进 MG/MGPC 的增殖对于再生来说并不足够,但机制研究通常集中在这一措施上。为了全面描述再生过程,并促进调节细胞再生的因素的筛选,需要一种定量细胞替代的测定方法。因此,我们改编了一种自动化报告基因辅助表型筛选平台,以定量分析幼鱼选择性细胞消融后细胞再生动力学的速度。在这里,我们详细介绍了一种使用这种方法来识别控制选择性视网膜细胞消融后视网膜细胞再生速度的化学物质和基因的方法。

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本文引用的文献

1
Common and divergent gene regulatory networks control injury-induced and developmental neurogenesis in zebrafish retina.常见和不同的基因调控网络控制斑马鱼视网膜损伤诱导和发育神经发生。
Nat Commun. 2023 Dec 20;14(1):8477. doi: 10.1038/s41467-023-44142-w.
2
Transcriptomic comparison of two selective retinal cell ablation paradigms in zebrafish reveals shared and cell-specific regenerative responses.转录组比较两种选择性视网膜细胞消融范式在斑马鱼中揭示了共同和细胞特异性的再生反应。
PLoS Genet. 2023 Oct 11;19(10):e1010905. doi: 10.1371/journal.pgen.1010905. eCollection 2023 Oct.
3
Heterogeneity in quiescent Müller glia in the uninjured zebrafish retina drive differential responses following photoreceptor ablation.
未受伤斑马鱼视网膜中静止的米勒神经胶质细胞的异质性驱动了光感受器消融后的不同反应。
Front Mol Neurosci. 2023 Jul 27;16:1087136. doi: 10.3389/fnmol.2023.1087136. eCollection 2023.
4
Nanoparticle-based targeting of microglia improves the neural regeneration enhancing effects of immunosuppression in the zebrafish retina.基于纳米颗粒的小胶质细胞靶向作用提高了免疫抑制在斑马鱼视网膜中增强神经再生的效果。
Commun Biol. 2023 May 18;6(1):534. doi: 10.1038/s42003-023-04898-9.
5
Large-scale F0 CRISPR screens in vivo using MIC-Drop.利用 MIC-Drop 在体内进行大规模 F0 CRISPR 筛选。
Nat Protoc. 2023 Jun;18(6):1841-1865. doi: 10.1038/s41596-023-00821-y. Epub 2023 Apr 17.
6
Common Aquarium Plants as an Enrichment Strategy in Zebrafish Facilities.常见水族箱植物作为斑马鱼设施中的一种丰容策略。
Zebrafish. 2022 Dec;19(6):218-223. doi: 10.1089/zeb.2022.0036. Epub 2022 Nov 2.
7
Notch Inhibition Promotes Regeneration and Immunosuppression Supports Cone Survival in a Zebrafish Model of Inherited Retinal Dystrophy.Notch 抑制促进再生和免疫抑制支持斑马鱼遗传性视网膜营养不良模型中锥体的存活。
J Neurosci. 2022 Jun 29;42(26):5144-5158. doi: 10.1523/JNEUROSCI.0244-22.2022. Epub 2022 Jun 7.
8
DMSO Concentrations up to 1% are Safe to be Used in the Zebrafish Embryo Developmental Toxicity Assay.高达1%的二甲基亚砜浓度用于斑马鱼胚胎发育毒性试验是安全的。
Front Toxicol. 2021 Dec 21;3:804033. doi: 10.3389/ftox.2021.804033. eCollection 2021.
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NTR 2.0: a rationally engineered prodrug-converting enzyme with substantially enhanced efficacy for targeted cell ablation.NTR 2.0:一种经过合理设计的前药转化酶,具有显著增强的靶向细胞消融功效。
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A Comparative Analysis of Gene and Protein Expression Throughout a Full 28-Day Retinal Regeneration Time-Course in Adult Zebrafish.成年斑马鱼完整28天视网膜再生时间进程中基因与蛋白质表达的比较分析
Front Cell Dev Biol. 2021 Nov 1;9:741514. doi: 10.3389/fcell.2021.741514. eCollection 2021.