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优化的双子叶植物精确编辑使番茄和拟南芥中可遗传的所需编辑成为可能。

Optimized dicot prime editing enables heritable desired edits in tomato and Arabidopsis.

机构信息

Division of Applied Life Science (BK21 Four Program), Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju, Republic of Korea.

Forest Protection Research Centre, Vietnamese Academy of Forest Sciences, Hanoi, Vietnam.

出版信息

Nat Plants. 2024 Oct;10(10):1502-1513. doi: 10.1038/s41477-024-01786-w. Epub 2024 Sep 6.

DOI:10.1038/s41477-024-01786-w
PMID:39242983
Abstract

Prime editing (PE) enables almost all types of precise genome editing in animals and plants. It has been successfully adapted to edit several plants with variable efficiency and versatility. However, this technique is inefficient for dicots for unknown reasons. Here, using new combinations of PE components, including an RNA chaperone and altered engineered prime editing guide RNAs driven by a PolII-PolIII composite promoter and a viral replicon system, we obtained up to 9.7% of the desired PE efficiency at the callus stage as assessed by targeted deep sequencing. Subsequently, we identified that up to 38.2% of transformants contained desired PE alleles in tomatoes and Arabidopsis, marking successful heritable PE transmission. Our PE tools also showed high accuracy, specificity and multiplexing capability, which unlocked the potential for practical PE applications in dicots, paving the way for transformative advancements in plant sciences.

摘要

先导编辑(PE)可实现动植物中几乎所有类型的精确基因组编辑。它已成功应用于编辑几种具有不同效率和多功能性的植物。然而,由于未知原因,该技术在双子叶植物中效率低下。在这里,我们使用包括 RNA 伴侣和经过工程改造的先导编辑引导 RNA 的新组合,这些 RNA 由 PolII-PolIII 复合启动子和病毒复制子系统驱动,在愈伤组织阶段通过靶向深度测序评估,我们获得了高达 9.7%的所需 PE 效率。随后,我们在番茄和拟南芥中鉴定出高达 38.2%的转化体含有所需的 PE 等位基因,标志着可遗传的 PE 传递成功。我们的 PE 工具还表现出高精度、特异性和多重编辑能力,为双子叶植物中实用的 PE 应用开辟了道路,为植物科学的变革性进步铺平了道路。

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The Obstacles and Potential Solution Clues of Prime Editing Applications in Tomato.番茄中碱基编辑应用的障碍及潜在解决方案线索
Biodes Res. 2022 Dec 15;2022:0001. doi: 10.34133/bdr.0001. eCollection 2022.
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Prime editing: Mechanism insight and recent applications in plants.碱基编辑:机制洞察与植物中的最新应用。
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Phage-assisted evolution and protein engineering yield compact, efficient prime editors.噬菌体辅助进化和蛋白质工程产生了紧凑、高效的 Prime 编辑器。
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Lupins in the genome editing era: advances in plant cell culture, double haploid technology and genetic transformation for crop improvement.基因组编辑时代的羽扇豆:用于作物改良的植物细胞培养、双单倍体技术及遗传转化进展
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Inhibition of RDR6 greatly improved prime editors in Arabidopsis.抑制RDR6可显著改善拟南芥中的碱基编辑器。
Plant Biotechnol J. 2025 Jun 12. doi: 10.1111/pbi.70188.
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Attaining the Promise of Geminivirus-Based Vectors in Plant Genome Editing.实现基于双生病毒载体在植物基因组编辑中的前景
Viruses. 2025 Apr 27;17(5):631. doi: 10.3390/v17050631.
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Plant engineering: advances, bottlenecks, and promise.工厂工程:进展、瓶颈与前景。
Plant J. 2025 Apr;122(2):e70117. doi: 10.1111/tpj.70117.
8
CRISPR-mediated genome editing of wheat for enhancing disease resistance.通过CRISPR技术对小麦进行基因组编辑以增强抗病性。
Front Genome Ed. 2025 Feb 25;7:1542487. doi: 10.3389/fgeed.2025.1542487. eCollection 2025.
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CRISPR-Cas applications in agriculture and plant research.CRISPR-Cas在农业和植物研究中的应用。
Nat Rev Mol Cell Biol. 2025 Mar 7. doi: 10.1038/s41580-025-00834-3.
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Cell. 2023 Aug 31;186(18):3983-4002.e26. doi: 10.1016/j.cell.2023.07.039.
4
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